Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2762 ATGCAAATGCTATCTGGCGACCCCTTTTCCTTATCCTCTTCCATCGGCGGGTTTGCTTCCGCACCGAACCCAAACCCTAACCCTAAACTTAACCCCCCTCCCCTCCCTAAGAAGAAGAGGAATCTACCGGGAACACCAGATCCAGATGCGGAGGTCATCGCTCTCTCACCCAAGTCTCTCATGGCTACCAATCGATTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTGCAGCTTCACCGAAGAGGACACAACCTCCCATGGAAGCTGCGACAGAGGTCGAACAAGGAGGTTCGGAAGAAGGTGTACATATGCCCAGAGACGACATGCGTACACCATGACCCCTCCAGAGCATTGGGGGACCTCACCGGGATAAAGAAGCATTTCAGCAGAAAACACGGGGAGAAGAAGTGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAGTCCGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAGTGCGACTGTGGTACCCTCTTCTCTAGGAAGGATAGTTTCATCACCCACCGAGCTTTCTGCGATGCCTTGACAGAAGAGAGTGCGAGGCTCACCTCAGTTGGCACGTCAGATTTAAATTTTAAAAACGAAGACAGCGTGATGAACTCTAACTCTCAGCTTAGCTCGGCACATGGATTTGGCATTTCTCAATTTGGTGCAAATGGATTTCGCTCAGAATTTGATGGGATGGGCATGAGTATGGGTGGTGCAGACCAGCAGATGAGGCCAAGCTTGTCACTGTGGTTGAACCAGCTGGGAAATCATCGCATCAATAATCCGCTAGATGTTGGACCTAATTCTGGCCTTTATGTGTCATCTTCAAGTTCTTCAGGTTTGCCCGAGATCAACATGCAAATTCCTCAACCCAATAATACCTTTGCTCCCTCTTCTTTGTCCAATTATTCCCCATCTTCACTTCCTATTGGGAAAAAAGGAGAAAGCAGTGGAACCGCAAACTTAGTACCCATTTATAATTCAGACCCTCGAAACAATCAATCAAAGCCAGCTTCTCCCATGTCAGCCACTGCACTTCTACAGAAAGCGGCTCAGATGGGTTCAGCCAGAAGCAGCAACTCCTCCATCTTTAGCGGCAGTTTTGGAGTCATGAGCTCTTCTTCTTCCCAGACTACGGCAAGTCTCGAAAATAATGCCGACCCAAACCGTAACAACGAGCTGAACCAAATGTATCAGAGTACGAAGCAATCAGAGAATTTTCGTTCAAGCAGCAGTGGTGTCGGCGTGTTGGGAGTAAGCAATAACTTCAGCTCATTGACGCATTCATCGAACAGTGGTCTTGATGAACTTGTGTCGCAATCCCATGGAAGGCAAATTAATAAACAAGTGCCATTGAAGCTGCATCCTGATTCAAACCCCGGGGAACATGGTTACACCAGAGATTTTCTTGGAATGAGCGCTGCAGGAGGAGCTGGCTCTCCTTTCCTTCCCCAGGAGCTCGCCAAGTATGCTTCCATGGCCTCATCCATGGGTATGTCTCAATTCACGAGTAGCACTACTCAATAA 1569 0.4799 MQMLSGDPFSLSSSIGGFASAPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPETTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARLTSVGTSDLNFKNEDSVMNSNSQLSSAHGFGISQFGANGFRSEFDGMGMSMGGADQQMRPSLSLWLNQLGNHRINNPLDVGPNSGLYVSSSSSSGLPEINMQIPQPNNTFAPSSLSNYSPSSLPIGKKGESSGTANLVPIYNSDPRNNQSKPASPMSATALLQKAAQMGSARSSNSSIFSGSFGVMSSSSSQTTASLENNADPNRNNELNQMYQSTKQSENFRSSSSGVGVLGVSNNFSSLTHSSNSGLDELVSQSHGRQINKQVPLKLHPDSNPGEHGYTRDFLGMSAAGGAGSPFLPQELAKYASMASSMGMSQFTSSTTQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2762 522 MobiDBLite consensus disorder prediction 25 41 - -
Prci1g2762 522 Gene3D Classic Zinc Finger 45 116 - -
Prci1g2762 522 Gene3D Classic Zinc Finger 119 199 - -
Prci1g2762 522 MobiDBLite consensus disorder prediction 382 407 - -
Prci1g2762 522 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Prci1g2762 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 502 IPR031140 -
Prci1g2762 522 MobiDBLite consensus disorder prediction 296 359 - -
Prci1g2762 522 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Prci1g2762 522 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Prci1g2762 522 MobiDBLite consensus disorder prediction 1 21 - -
Prci1g2762 522 FunFam protein indeterminate-domain 12-like 45 113 - -
Prci1g2762 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Prci1g2762 522 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Prci1g2762 522 MobiDBLite consensus disorder prediction 1 50 - -
Prci1g2762 522 SMART c2h2final6 66 88 IPR013087 -
Prci1g2762 522 SMART c2h2final6 107 137 IPR013087 -
Prci1g2762 522 SMART c2h2final6 142 162 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2762 Prci-Chr1 46606336 46608914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2762 1 246 IDZ Gene Family AT5G03150 65.248 3.11e-121 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g2762 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2762 K25870 - gmx:100801182 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2762 1 46606336 46608914 Prci1g2762 1 46606336 46608914 ECH