Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2752 ATGGGGCAGAGACATTTATATAGCATATCTCAGATGTTTGGAAGCGAGCAGGAGCAGAATTGGAATTATATGCATGCTGATCAAGATTATGTGCAACCAGGTAGGGCTAGCACTTCACAGAATGGTTCTTTCATTTATCCAGTAGAAAATATGTCTATAGATGGCAGCTCCCTGGCTGCTCCTTGGAACAATGCTACAATGTCAAATGGATATGCATCCCCTAGTATCAACACTGAATTACCCCCTCATCAATCAGATGCATCAAGATCTTCTCATGATCATTTTCCGCGTTCATCAAATCCTGGAGCCTTTTTTGCAGTTTCTGAAAACTATGCTCACCAGCCTTCTTCCAGTTATGATAGACAAGAATTTCATGTTGCCGATGGTGGTTTCTTTGATTTTACCATGGGAAGTGGAAGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCACTTTGTGAGAGAGGCAGCACAAGCAGATATTTCAGTGCAGGCAGCTCAACTGATCTTCCTATGTCTTCGGAAATAAGACAGGAGAAGCAAAGCTTGGATTCTCAATACCTGCCTTGGGATCATGTTACTGTGACTCCCCCCATCAGAGGCAATGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTTAGGTGTCGTTCTGCACTTGATTTGGAATCTAACCTTGCTAGGACACATTTATCTAGCAACCATTTGCACAACTTCTCTTCTGGCCAGCCCACTGACCATTCTAGTGCAGTGAATCTTCCTGGTCATAGTTCTAGTGCTATGACAAGGGACTGGAGCCAAATGAACATTTCTCCTGCTCATGGGAGCGTATTATTATCTGAATCAAGTGGATATAATCGTGAGAAAAGTCGCATGCTAGTTGGAAATGGTGTTGGCAATTCTTCAGTGGATGCTGGGAGTTACCATCATGAATATAATACGAGCATAAATCCTACTGTTTCCCAAAGTTTTCACAGTAACCTCACTCACGCTGCTAGGGGAGTTCGAAGTAACTATTCCCAAAGATCTACTCCAACACCTACTCCAACTCCAACTTTTAGGGCCTCTTCAAGCTCATGCGTGGGACAAATGGTGCCTTCAGAAGGTGGGTTGCACATGGGAGCTGAAGGTTTTATGTCTAGACATCCAAGGCCATTGACTGCCATCAGTTGGCGGAACAGTGATAGAAATGGGAGGTCAAGGATATCTAGTGAGAGATATCGATCATTGGTTGATGAGGCTATTCTTCATGATAGATTTTCTTCTGAGGGTTTTATGGTTGTTGATCGTGCCCCACCGTATGGTTCCAGAAATATGATTGATCAGCATAGAGATATGAGGATGGACATAGACAATATGAGTTATGAGGAACTACTTGCTCTTGGAGAGAGGATTGGTCATGTCAGCACGGGATTGTCTGGGAACTTGATTTCGAATTGTTTGACAGAATCAATATATTGCTCATCTGAGCAAAGCCAAGAGGAAGGAAGTTGTGTAATCTGCCTGGAAGAGTACAAGTACATGGACGATGTTGGGACACTGAGAAGTTGCGGCCACGACTATCACGTGAGCTGCATTAGGAAGTGGTTATCTATGAAGAACCTATGTCCTATCTGCAAATCTTCTGCTCTTCCTGATGCTATGAAGGATAAATAA 1662 0.4362 MGQRHLYSISQMFGSEQEQNWNYMHADQDYVQPGRASTSQNGSFIYPVENMSIDGSSLAAPWNNATMSNGYASPSINTELPPHQSDASRSSHDHFPRSSNPGAFFAVSENYAHQPSSSYDRQEFHVADGGFFDFTMGSGRGPHKRKSPGIPSLCERGSTSRYFSAGSSTDLPMSSEIRQEKQSLDSQYLPWDHVTVTPPIRGNGLSIRGEGSLRNVRCRSALDLESNLARTHLSSNHLHNFSSGQPTDHSSAVNLPGHSSSAMTRDWSQMNISPAHGSVLLSESSGYNREKSRMLVGNGVGNSSVDAGSYHHEYNTSINPTVSQSFHSNLTHAARGVRSNYSQRSTPTPTPTPTFRASSSSCVGQMVPSEGGLHMGAEGFMSRHPRPLTAISWRNSDRNGRSRISSERYRSLVDEAILHDRFSSEGFMVVDRAPPYGSRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSGNLISNCLTESIYCSSEQSQEEGSCVICLEEYKYMDDVGTLRSCGHDYHVSCIRKWLSMKNLCPICKSSALPDAMKDK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2752 553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 140 546 IPR045191 GO:0061630
Prci1g2752 553 SMART ring_2 500 541 IPR001841 -
Prci1g2752 553 MobiDBLite consensus disorder prediction 336 363 - -
Prci1g2752 553 MobiDBLite consensus disorder prediction 73 99 - -
Prci1g2752 553 CDD RING-H2_RNF24-like 500 545 - -
Prci1g2752 553 ProSiteProfiles Zinc finger RING-type profile. 500 542 IPR001841 -
Prci1g2752 553 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 465 546 - -
Prci1g2752 553 Pfam Ring finger domain 499 542 IPR001841 -
Prci1g2752 553 SUPERFAMILY RING/U-box 490 546 - -
Prci1g2752 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 546 IPR013083 -
Prci1g2752 553 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2752 Prci-Chr1 46569462 46577359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2752 1 552 C3H Transcription Factor Family AT2G37150 41.873 1.05e-113 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2752 - - qsa:O6P43_006681 761.14