Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2720 ATGTGTACAGGAACCACGTGGTCGAATCATCTGCCCAGCCTTGAGATTGAGCACAGAGCCCCGAAGGTGGAGAGAGAATACGAAATAGAAAGCAAAAAGAAGAGAGAAGCGTCCGATCCTTCTCCCATTCCCATCGATCTCACTCTCGCGCCAAATACAAATTCTCCACATCCCCCCAGGTTTCCTGCAACCATGGCTGATGCTCCGGCCAGTCCCGGCGCTGGTGGTAGCCACGAGAGCGGTGATCAGAGCCCCCGCTCTAATGTCCGAGAGCAGGACAGATACCTGCCCATCGCCAATATCAGTCGAATCATGAAGAAGGCGCTTCCTGCTAATGGAAAAATCGCAAAGGATGCCAAGGAGACTGTGCAGGAATGCGTTTCCGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGACAAGTGTCAGAGGGAAAAGAGGAAGACCATTAACGGCGATGATTTACTGTGGGCAATGGCGACTCTGGGGTTCGAGGATTACATCGATCCCCTGAAGATTTATCTGAGCAGATACAGAGAGTTGTTGCAGATGGAGGGTGATACCAAGGGTTCGGCAAAGGGTGGAGAAGTATCTACCAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCGCAAGGTGTCAGCTATACAAATTCTCAGTTACTAGGCGCAAACAATTTGGTTTATGACAGTGATGGGATGCAAGACTTGATGACATATCCTTCATAG 750 0.496 MCTGTTWSNHLPSLEIEHRAPKVEREYEIESKKKREASDPSPIPIDLTLAPNTNSPHPPRFPATMADAPASPGAGGSHESGDQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYRELLQMEGDTKGSAKGGEVSTKKDVQPSPNAQLAHQGSFSQGVSYTNSQLLGANNLVYDSDGMQDLMTYPS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2720 249 Gene3D Histone, subunit A 82 218 IPR009072 GO:0046982
Prci1g2720 249 MobiDBLite consensus disorder prediction 15 40 - -
Prci1g2720 249 FunFam Nuclear transcription factor Y subunit B-3 84 211 - -
Prci1g2720 249 PRINTS CCAAT-binding transcription factor subunit A signature 161 179 - -
Prci1g2720 249 PRINTS CCAAT-binding transcription factor subunit A signature 142 160 - -
Prci1g2720 249 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Prci1g2720 249 SUPERFAMILY Histone-fold 92 212 IPR009072 GO:0046982
Prci1g2720 249 MobiDBLite consensus disorder prediction 188 216 - -
Prci1g2720 249 MobiDBLite consensus disorder prediction 1 93 - -
Prci1g2720 249 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 159 IPR003958 -
Prci1g2720 249 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 79 205 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci1g2720 249 ProSitePatterns NF-YB/HAP3 subunit signature. 126 142 IPR003956 GO:0005634|GO:0006355|GO:0043565
Prci1g2720 249 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2720 Prci-Chr1 46407215 46411043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2720 65 227 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.331 9.07e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci1g2720 CBFD_NFYB_HMF 2.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2720 K08065 - zju:107432901 288.5