Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2660 ATGGAATTTGAATGCAAGACCTGCAACCGCAAGTTCTCTTCCTTTCAAGCTCTTGGAGGTCACAGAGCCAGCCACAAGAAGCCCAGGCTTGATTCCCAAGCCCAGCCCCACAAACCCGATCCCGCGAGATCGGTGCACGAGTGCTCTATTTGTGGCCAGCGATTCTCTCTGGGACAGGCCCTCGGAGGCCACATGCGAAAGCACAGAGCCGCCGTCACAGAGGAGGCCGTCCCCTGCTTGCCGGTTCTCAGGAGGTGCAACAGCAAGAGGGTGGTGTGCCTCGACTTGAACTTGACCCCTCTCCAGAATGACCTCAACCTCCTCTTCGGAGACAGGGCTCCTCAGCTCAATCTCTCCCTGTGCTCAAGATTTGAAGGCATGAAGAGGGAGAGAGATTGCGAGAGAATGGACGTGGCCAATTGTCTGATGCTGCTGTCTCACCATGCTCGTCAAGAAACAAAAGCTGAGGGTTTAGAATTCGAATGCAAGACGTGCAAGCGAAAGTTCTCGTCGTTTCAGGCTCTGGGAGGGCACAGGGCGAGCCACAAGAGGGCTAAGTTGGAGGGTGGCGAACAAGACTTGAAAGCAGAGGCCAAATCTCTGAGGTTAGGGAACAAACCCAGGATGCACGAGTGCTCCGTCTGTGGCATGGAATTCTCGCTGGGCCAAGCACTCGGAGGCCACATGAGGAAGCACAGGGCTGCTCTTCACCATGATACGCACCCAGTGGACGACGTCGTTGCCAGGGTCCCTGTTCTTAAGCGATCCAATAGCACCAGGGTTCTGTGTTTGGATCTTAACTTGACGCCTCTCCAGAATGACTTGAATTTATTGCTCGCAAACATGGCACCCGCCTTCACCTGA 864 0.5486 MEFECKTCNRKFSSFQALGGHRASHKKPRLDSQAQPHKPDPARSVHECSICGQRFSLGQALGGHMRKHRAAVTEEAVPCLPVLRRCNSKRVVCLDLNLTPLQNDLNLLFGDRAPQLNLSLCSRFEGMKRERDCERMDVANCLMLLSHHARQETKAEGLEFECKTCKRKFSSFQALGGHRASHKRAKLEGGEQDLKAEAKSLRLGNKPRMHECSVCGMEFSLGQALGGHMRKHRAALHHDTHPVDDVVARVPVLKRSNSTRVLCLDLNLTPLQNDLNLLLANMAPAFT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2660 287 MobiDBLite consensus disorder prediction 24 42 - -
Prci1g2660 287 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Prci1g2660 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 242 IPR013087 -
Prci1g2660 287 SMART c2h2final6 3 25 IPR013087 -
Prci1g2660 287 SMART c2h2final6 160 182 IPR013087 -
Prci1g2660 287 SMART c2h2final6 210 232 IPR013087 -
Prci1g2660 287 SMART c2h2final6 46 68 IPR013087 -
Prci1g2660 287 Pfam C2H2-type zinc finger 210 234 - -
Prci1g2660 287 Pfam C2H2-type zinc finger 3 28 - -
Prci1g2660 287 Pfam C2H2-type zinc finger 160 184 - -
Prci1g2660 287 Pfam C2H2-type zinc finger 45 70 - -
Prci1g2660 287 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Prci1g2660 287 SUPERFAMILY beta-beta-alpha zinc fingers 160 232 IPR036236 -
Prci1g2660 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 30 IPR013087 -
Prci1g2660 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Prci1g2660 287 SUPERFAMILY beta-beta-alpha zinc fingers 3 68 IPR036236 -
Prci1g2660 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Prci1g2660 287 PANTHER ZINC FINGER PROTEIN ZAT5 128 272 - -
Prci1g2660 287 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Prci1g2660 287 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Prci1g2660 287 Gene3D Classic Zinc Finger 157 232 - -
Prci1g2660 287 Gene3D Classic Zinc Finger 1 68 - -
Prci1g2660 287 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2660 Prci-Chr1 46006830 46014455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2660 127 280 C2H2 Transcription Factor Family AT2G37430 44.643 5.55e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g2660 zf-C2H2_6 4.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2660 - - pcin:129302030 565.074