Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2643 ATGGCTTTCTTCTCTGGAATCCGTCGCCTTATTCGCGATTCATCTTCTTCCTCTTCAATTCTCTATTCGCAAGGCTTCTCGATTCGTCTTTGTTCAACCCTCACGACCCCCAAGCTTTTCGTCAGTGGTCTTTCAAGACTGACCACGGATGAAAAGCTGAAGGAAGCATTTGCTCCTTTTGGGCAACTGGTTGAAGCTAAGGTCATAACTGATAGAATATCTGGAAGATCAAAGGGATTTGGTTTTGTAACTTACGCAAACATAGAAGATGCTGAAAAGGCCAAGGAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTCATTTTTGTCGATCCTGCCAAACCAAGAGAACCTAAACCTCTGCAATCACAGACTAAGCCCTCTGAAACAGGTTTTACAGTAAACAAGACGGTTGGATGGTGTGGTTGA 429 0.4359 MAFFSGIRRLIRDSSSSSSILYSQGFSIRLCSTLTTPKLFVSGLSRLTTDEKLKEAFAPFGQLVEAKVITDRISGRSKGFGFVTYANIEDAEKAKEGMNAKFLDGWVIFVDPAKPREPKPLQSQTKPSETGFTVNKTVGWCG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2643 142 PANTHER NUCLEOLAR PROTEIN 8 15 141 - -
Prci1g2643 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Prci1g2643 142 SMART rrm1_1 38 111 IPR000504 GO:0003723
Prci1g2643 142 SUPERFAMILY RNA-binding domain, RBD 37 124 IPR035979 GO:0003676
Prci1g2643 142 Gene3D - 23 127 IPR012677 -
Prci1g2643 142 FunFam RNA binding protein 24 136 - -
Prci1g2643 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2643 Prci-Chr1 45897869 45900892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2643 36 140 Eukaryotic Initiation Factors Gene Family AT3G16380 29.524 5.88e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2643 - - qsa:O6P43_006775 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2643 1 45897869 45900892 Prci1g2643 1 45897869 45900892 ECH