Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2625 ATGGATGACGACGAATACCCGATACCCACGTCATCTGAGGTGCCCCGCCAAAAGAAGCCCTCCGTGCCCGAGGACGACATCATGGAGCTCTTGTGGCAAAACGGACAGGTCGTGATGCAGAGCCAGAATAATCGGCCTCAGAGAAAACCACCGCCAGAGAGGTACCCCGACAGCGTAATCCCAGCCGGTCCGTCGACAGGGAGGGAAATTCGACCCTCGCAACAAGTAGAACAACACTATCAGAATCAACATATCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCACTATCCCATCGTAGATGATCCTCCCTTCGATCAAAATTTCTGCCCCGACATCCTCTTCCCGCAGCCGCCCACTGTCAATAACAGTTCCATGCAGAATCCTGACCGTACGTCTCCCGCATCGGAAATCCGGCAACCATCGAGGTCGGTCGCTCCTCGGCCGCCGATTCCACCTCCACGGAAGCCGGAGCAGGTGCGGACGATGATACCGAACTTTGCGCACTTCTCCAAACACAATGCGACAGTTGAAGCGGGACCTTCGAGTTCGAAGACGGCGATGAAGGAATTGACGGTGGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGACTTTCAGAAACTCGGCGGAGCCTACAGAGCACGATGAGGCTCCTGGAACCCTGAGCACCGCAGGGGCTGCGGCTCCTTCGTCAACGTCGGTCGGCGGAGATACTGGCTTCAGGGAGACGACAACGTGCGAGATGATGGCGACGTCATCGCCGGGAGGTTCGAGCGAGGCTGCTGAACCGGTGGGGAGACATGCGGCTGAGGATCGGAAACGGAAGGGCCGGGAAGCCGATGAATCGGAGTGCCACAGCGAGGATGTCTATGTTGAATCTGCTGAAGCCAAGAAACAAAACTGTGGATCATCATCTACTAAAAGATCACGAGCTGCAGAGGTTCACAATCTCTCGGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATTCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAGGTTCAGATGATGTCCATGGGATGTGGGATGGTCCCAATGATGTTTCCAGGAATTCAACAGTATATGCCACCAATGGGGATGGGGATGGGCATGGGCATGGGCATGGGCATGGGCATGGAAATGGCACTGAATAGGCCACTGATGCCATTTCCCAATATGTTAGCTGCTTCTGCTATGCCTCCAGCGGCAGCAGCTCAATTGGGACCAAGGTTCCCTATGCCTCCTTTCCAAATTCCTCATGCCCCTCAACCTGATTCATCTAGAACGCAAGCAGCAGCTCCAAATCAATCAGAAAATAATACGCTTCCTTCCCTTGTCACACCTGATCCCAACCAGTCACGGATTCCTAACTTTAGTGATCCTTATCAGCAATGCCTTGGTCCCCACCAGATGCATCTGCAGTTCATGCAGAATCAGGTAATGAACAACCCAACTGTCCAAGTACCAGTAAGAGCCATGGAAATGCAGAAAAAAATCAACCAGAGTAACTATGAGGACGGAACCAGCGAGTGA 1626 0.5252 MDDDEYPIPTSSEVPRQKKPSVPEDDIMELLWQNGQVVMQSQNNRPQRKPPPERYPDSVIPAGPSTGREIRPSQQVEQHYQNQHIFMQEDEMISWLHYPIVDDPPFDQNFCPDILFPQPPTVNNSSMQNPDRTSPASEIRQPSRSVAPRPPIPPPRKPEQVRTMIPNFAHFSKHNATVEAGPSSSKTAMKELTVVDSCDTPALMASASRVSETFRNSAEPTEHDEAPGTLSTAGAAAPSSTSVGGDTGFRETTTCEMMATSSPGGSSEAAEPVGRHAAEDRKRKGREADESECHSEDVYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGMGMGMGMGMGMEMALNRPLMPFPNMLAASAMPPAAAAQLGPRFPMPPFQIPHAPQPDSSRTQAAAPNQSENNTLPSLVTPDPNQSRIPNFSDPYQQCLGPHQMHLQFMQNQVMNNPTVQVPVRAMEMQKKINQSNYEDGTSE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2625 541 PANTHER TRANSCRIPTION FACTOR PIF3 15 473 IPR044273 GO:0003700|GO:0006355
Prci1g2625 541 MobiDBLite consensus disorder prediction 146 160 - -
Prci1g2625 541 FunFam Basic helix-loop-helix transcription factor 314 377 - -
Prci1g2625 541 MobiDBLite consensus disorder prediction 1 74 - -
Prci1g2625 541 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 397 IPR036638 GO:0046983
Prci1g2625 541 Gene3D - 314 377 IPR036638 GO:0046983
Prci1g2625 541 MobiDBLite consensus disorder prediction 453 495 - -
Prci1g2625 541 Pfam Helix-loop-helix DNA-binding domain 323 369 IPR011598 GO:0046983
Prci1g2625 541 MobiDBLite consensus disorder prediction 34 48 - -
Prci1g2625 541 MobiDBLite consensus disorder prediction 233 267 - -
Prci1g2625 541 SMART finulus 325 374 IPR011598 GO:0046983
Prci1g2625 541 MobiDBLite consensus disorder prediction 437 495 - -
Prci1g2625 541 MobiDBLite consensus disorder prediction 209 327 - -
Prci1g2625 541 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Prci1g2625 541 CDD bHLH_AtPIF_like 319 382 IPR047265 -
Prci1g2625 541 MobiDBLite consensus disorder prediction 112 160 - -
Prci1g2625 541 MobiDBLite consensus disorder prediction 306 320 - -
Prci1g2625 541 MobiDBLite consensus disorder prediction 118 141 - -
Prci1g2625 541 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2625 Prci-Chr1 45752634 45757546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2625 3 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.519 5.05e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g2625 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2625 - - pcin:129287665 1021.54