Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2624 ATGAATCACTGTGTTCCAGATTTTGAAATTGAAATGGATGACGACGAATACCCGATACCCACGTCATCTGAGGTGCCCCGCCAAAAGAAGCCCTCCGTGCCCGAGGACGACATCATGGAGCTCTTGTGGCAAAACGGACAGGTCGTGATGCAGAGCCAGAATAATCGGCCTCAGAGAAAACCACCGCCAGAGAGGTACCCCGACAGCGTAATCCCAGCCGGTCCGTCGACAGGGAGGGAAATTCGACCCTCGCAACAAGTAGAACAACACTATCAGAATCAACATATCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCACTATCCCATCGTAGATGATCCTCCCTTCGATCAAAATTTCTGCCCCGACATCCTCTTCCCGCAGCCGCCCACTGTCAATAACAGTTCCATGCAGAATCCTGACCGTACGTCTCCCGCATCGGAAATCCGGCAACCATCGAGGTCGGTCGCTCCTCGGCCGCCGATTCCACCTCCACGGAAGCCGGAGCAGGTGCGGACGATGATACCGAACTTTGCGCACTTCTCCAAACACAATGCGACAGTTGAAGCGGGACCTTCGAGTTCGAAGACGGCGATGAAGGAATTGACGGTGGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGACTTTCAGAAACTCGGCGGAGCCTACAGAGCACGATGAGGCTCCTGGAACCCTGAGCACCGCAGGGGCTGCGGCTCCTTCGTCAACGTCGGTCGGCGGAGATACTGGCTTCAGGGAGACGACAACGTGCGAGATGATGGCGACGTCATCGCCGGGAGGTTCGAGCGAGGCTGCTGAACCGGTGGGGAGACATGCGGCTGAGGATCGGAAACGGAAGGGCCGGGAAGCCGATGAATCGGAGTGCCACAGCGAGGATGTCTATGTTGAATCTGCTGAAGCCAAGAAACAAAACTGTGGATCATCATCTACTAAAAGATCACGAGCTGCAGAGGTTCACAATCTCTCGGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATTCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAGGTTCAGATGATGTCCATGGGATGTGGGATGGTCCCAATGATGTTTCCAGGAATTCAACAGTATATGCCACCAATGGGGATGGGGATGGGCATGGGCATGGGCATGGGCATGGGCATGGAAATGGCACTGAATAGGCCACTGATGCCATTTCCCAATATGTTAGCTGCTTCTGCTATGCCTCCAGCGGCAGCAGCTCAATTGGGACCAAGGTTCCCTATGCCTCCTTTCCAAATTCCTCATGCCCCTCAACCTGATTCATCTAGAACGCAAGCAGCAGCTCCAAATCAATCAGAAAATAATACGCTTCCTTCCCTTGTCACACCTGATCCCAACCAGTCACGGATTCCTAACTTTAGTGATCCTTATCAGCAATGCCTTGGTCCCCACCAGATGCATCTGCAGTTCATGCAGAATCAGGTAATGAACAACCCAACTGTCCAAGTACCAGTAAGAGCCATGGAAATGCAGAAAAAAATCAACCAGAGTAACTATGAGGACGGAACCAGCGAGTGA 1659 0.5208 MNHCVPDFEIEMDDDEYPIPTSSEVPRQKKPSVPEDDIMELLWQNGQVVMQSQNNRPQRKPPPERYPDSVIPAGPSTGREIRPSQQVEQHYQNQHIFMQEDEMISWLHYPIVDDPPFDQNFCPDILFPQPPTVNNSSMQNPDRTSPASEIRQPSRSVAPRPPIPPPRKPEQVRTMIPNFAHFSKHNATVEAGPSSSKTAMKELTVVDSCDTPALMASASRVSETFRNSAEPTEHDEAPGTLSTAGAAAPSSTSVGGDTGFRETTTCEMMATSSPGGSSEAAEPVGRHAAEDRKRKGREADESECHSEDVYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGMGMGMGMGMGMEMALNRPLMPFPNMLAASAMPPAAAAQLGPRFPMPPFQIPHAPQPDSSRTQAAAPNQSENNTLPSLVTPDPNQSRIPNFSDPYQQCLGPHQMHLQFMQNQVMNNPTVQVPVRAMEMQKKINQSNYEDGTSE 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2624 552 MobiDBLite consensus disorder prediction 45 59 - -
Prci1g2624 552 MobiDBLite consensus disorder prediction 129 152 - -
Prci1g2624 552 MobiDBLite consensus disorder prediction 284 314 - -
Prci1g2624 552 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Prci1g2624 552 MobiDBLite consensus disorder prediction 157 171 - -
Prci1g2624 552 MobiDBLite consensus disorder prediction 122 171 - -
Prci1g2624 552 MobiDBLite consensus disorder prediction 448 506 - -
Prci1g2624 552 Pfam Helix-loop-helix DNA-binding domain 334 380 IPR011598 GO:0046983
Prci1g2624 552 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 408 IPR036638 GO:0046983
Prci1g2624 552 CDD bHLH_AtPIF_like 330 393 IPR047265 -
Prci1g2624 552 PANTHER TRANSCRIPTION FACTOR PIF3 26 483 IPR044273 GO:0003700|GO:0006355
Prci1g2624 552 MobiDBLite consensus disorder prediction 317 331 - -
Prci1g2624 552 MobiDBLite consensus disorder prediction 244 278 - -
Prci1g2624 552 FunFam Basic helix-loop-helix transcription factor 325 388 - -
Prci1g2624 552 Gene3D - 325 388 IPR036638 GO:0046983
Prci1g2624 552 MobiDBLite consensus disorder prediction 1 87 - -
Prci1g2624 552 MobiDBLite consensus disorder prediction 464 506 - -
Prci1g2624 552 SMART finulus 336 385 IPR011598 GO:0046983
Prci1g2624 552 MobiDBLite consensus disorder prediction 220 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2624 Prci-Chr1 45752634 45757546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2624 1 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.058 1.03e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g2624 HLH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2624 - - pcin:129287665 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2624 1 45752634 45757546 Prci1g2624 1 45752634 45757546 ECH