Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2623 ATGGTGACTAGCTACAGAGTTGCACCTCTCCACAGAAGCAGTATGAATCACTGTGTTCCAGATTTTGAAATTGAAATGGATGACGACGAATACCCGATACCCACGTCATCTGAGGTGCCCCGCCAAAAGAAGCCCTCCGTGCCCGAGGACGACATCATGGAGCTCTTGTGGCAAAACGGACAGGTCGTGATGCAGAGCCAGAATAATCGGCCTCAGAGAAAACCACCGCCAGAGAGGTACCCCGACAGCGTAATCCCAGCCGGTCCGTCGACAGGGAGGGAAATTCGACCCTCGCAACAAGTAGAACAACACTATCAGAATCAACATATCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCACTATCCCATCGTAGATGATCCTCCCTTCGATCAAAATTTCTGCCCCGACATCCTCTTCCCGCAGCCGCCCACTGTCAATAACAGTTCCATGCAGAATCCTGACCGTACGTCTCCCGCATCGGAAATCCGGCAACCATCGAGGTCGGTCGCTCCTCGGCCGCCGATTCCACCTCCACGGAAGCCGGAGCAGGTGCGGACGATGATACCGAACTTTGCGCACTTCTCCAAACACAATGCGACAGTTGAAGCGGGACCTTCGAGTTCGAAGACGGCGATGAAGGAATTGACGGTGGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGACTTTCAGAAACTCGGCGGAGCCTACAGAGCACGATGAGGCTCCTGGAACCCTGAGCACCGCAGGGGCTGCGGCTCCTTCGTCAACGTCGGTCGGCGGAGATACTGGCTTCAGGGAGACGACAACGTGCGAGATGATGGCGACGTCATCGCCGGGAGGTTCGAGCGAGGCTGCTGAACCGGTGGGGAGACATGCGGCTGAGGATCGGAAACGGAAGGGCCGGGAAGCCGATGAATCGGAGTGCCACAGCGAGGATGTCTATGTTGAATCTGCTGAAGCCAAGAAACAAAACTGTGGATCATCATCTACTAAAAGATCACGAGCTGCAGAGGTTCACAATCTCTCGGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATTCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAGGTTCAGATGATGTCCATGGGATGTGGGATGGTCCCAATGATGTTTCCAGGAATTCAACAGTATATGCCACCAATGGGGATGGGGATGGGCATGGGCATGGGCATGGGCATGGGCATGGAAATGGCACTGAATAGGCCACTGATGCCATTTCCCAATATGTTAGCTGCTTCTGCTATGCCTCCAGCGGCAGCAGCTCAATTGGGACCAAGGTTCCCTATGCCTCCTTTCCAAATTCCTCATGCCCCTCAACCTGATTCATCTAGAACGCAAGCAGCAGCTCCAAATCAATCAGAAAATAATACGCTTCCTTCCCTTGTCACACCTGATCCCAACCAGTCACGGATTCCTAACTTTAGTGATCCTTATCAGCAATGCCTTGGTCCCCACCAGATGCATCTGCAGTTCATGCAGAATCAGGTAATGAACAACCCAACTGTCCAAGTACCAGTAAGAGCCATGGAAATGCAGAAAAAAATCAACCAGAGTAACTATGAGGACGGAACCAGCGAGTGA 1701 0.5203 MVTSYRVAPLHRSSMNHCVPDFEIEMDDDEYPIPTSSEVPRQKKPSVPEDDIMELLWQNGQVVMQSQNNRPQRKPPPERYPDSVIPAGPSTGREIRPSQQVEQHYQNQHIFMQEDEMISWLHYPIVDDPPFDQNFCPDILFPQPPTVNNSSMQNPDRTSPASEIRQPSRSVAPRPPIPPPRKPEQVRTMIPNFAHFSKHNATVEAGPSSSKTAMKELTVVDSCDTPALMASASRVSETFRNSAEPTEHDEAPGTLSTAGAAAPSSTSVGGDTGFRETTTCEMMATSSPGGSSEAAEPVGRHAAEDRKRKGREADESECHSEDVYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGMGMGMGMGMGMEMALNRPLMPFPNMLAASAMPPAAAAQLGPRFPMPPFQIPHAPQPDSSRTQAAAPNQSENNTLPSLVTPDPNQSRIPNFSDPYQQCLGPHQMHLQFMQNQVMNNPTVQVPVRAMEMQKKINQSNYEDGTSE 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2623 566 MobiDBLite consensus disorder prediction 331 345 - -
Prci1g2623 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 422 IPR036638 GO:0046983
Prci1g2623 566 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
Prci1g2623 566 CDD bHLH_AtPIF_like 344 407 IPR047265 -
Prci1g2623 566 Gene3D - 339 402 IPR036638 GO:0046983
Prci1g2623 566 MobiDBLite consensus disorder prediction 65 101 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 298 328 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 478 520 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 258 292 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 234 352 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 27 49 - -
Prci1g2623 566 PANTHER TRANSCRIPTION FACTOR PIF3 40 498 IPR044273 GO:0003700|GO:0006355
Prci1g2623 566 SMART finulus 350 399 IPR011598 GO:0046983
Prci1g2623 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Prci1g2623 566 MobiDBLite consensus disorder prediction 143 166 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 462 520 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 136 185 - -
Prci1g2623 566 MobiDBLite consensus disorder prediction 171 185 - -
Prci1g2623 566 FunFam Basic helix-loop-helix transcription factor 339 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2623 Prci-Chr1 45752634 45757546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2623 15 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.058 1.39e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g2623 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2623 - - pcin:129287665 1073.54