Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2561 ATGTCGAAGAGAGGTCGCGGTGGAACGGCCGGGAACAAGTTCCGGATGTCACTGGGTCTTCCGGTGGCGGCGACAGTGAACTGCGCTGACAATACTGGAGCTAAGAACCTCTACATTATTTCGGTGAAGGGGATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCTTGCGTTGGTGACATGGTCATGGCCACCGTGAAGAAAGGAAAGCCTGATCTTAGGAAGAAGGTCCTGCCAGCTGTCATTGTTCGCCAGCGCAAGCCATGGCGCAGAAAGGACGGCGTTTATATGTACTTTGAAGATAATGCGGGTGTCATTGTTAATCCCAAGGGTGAGATGAAAGGCTCCGCAATTACTGGTCCAATTGGCAAGGAGTGTGCTGATTTATGGCCTAGGATTGCAAGTGCCGCCAATGCAATTGTCTGA 423 0.5201 MSKRGRGGTAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2561 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Prci1g2561 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 139 IPR000218 GO:0003735|GO:0005840|GO:0006412
Prci1g2561 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Prci1g2561 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Prci1g2561 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Prci1g2561 140 FunFam 60S ribosomal protein L23 1 140 - -
Prci1g2561 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Prci1g2561 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci1g2561 Prci-Chr1 45361352 45363199 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2561 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 98.571 2.49e-99 279
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2561 K02894 - cpap:110825233 284.648
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2561 1 45361352 45363199 Prci3g3177 3 42938438 42940291 CCT
Prci1g2561 1 45361352 45363199 Prci1g2561 1 45361352 45363199 ECH