Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2559 ATGGAAGCACGCCCTGCCTTTTCCATTGAAAGATCAAGTGCAAAGCAACTCAGTAGCATGGGAATATCTGGAGCACTATCTTCATCCTTGCCCGTCCACCCATCATCCATAGAAGAGACATATTCCGAATTACCTGATTCTCAGCAGGCTTTTGTGGAAAAAGAGCACATGGCAAGACCTCTCACTCATTCAAGTCATTTAAATTCCAGCGGAGCAGTTGGGCACTTGTTTTCATCATCGCCTGGATATTCTACTGACCTTCATCACTCATCCCTTTCACCTCATGGAAAACACCCAAGAAACCCGCATTTTATTTCACAGTCTTCAAGTAACATGGCATCATTGCCATTGTCATATTCTTCTAGTACTGGACCACTGCCTTCTACAACATCAAGTTGTTATTCCAAAGAAAGTAATGCGTCCTGGTCTACAGATTCCTTGCCAAACATTCTTGATTTTCCTGTAAATACTTCCATTAATGATAGTCAAATAGAAAGCAGTGCCTGCAATATAATGGCACCTGACGAGTGTGGTAAGAGAAATGATTGGCAGGAGTGGGCTGACCAACTGATCAATGATGATGATGCATTGACTCCTAATTGGAATGACATTCTTGTTGACCCCGGCATTCATGATCTTGAACCAAAGGTGTCATGCCAGACTTCAAAATCATCTTCACAATTTCCAGGGCAGCAGTCCCAAGGTCACCAGCAACTTTCAGCTTCATCTGGAGAAAAACATGTTAGTGTTCCACCCTCTTCTTCAGCAAATTCTGCTCCTGCCAAACCACGAATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCAACCCCTAAGGGTGTGCTGAAGCTTATGAAAGTTGAAGGCTTAACAATATATCACGTTAAAAGCCACTTACAGAAATATAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGATCCTCGGAGAAAAAGTTAACTCCAATGGAAGAGATGTCATCTCTAGACTTGAAAACTGGTATTGAGCTCACTGAGGCTCTAAGACTGCAGATGGAGGTTCAGAAGCGCCTGCATGAACAACTAGAGATTCAAAGGAATTTACAGTTGCGGATTGAAGAACAAGGAAGGTACCTCCAAATGATGTTTGAGCAGCAATGCAAATCTGGCGTTGAAAAGTTTACGGCCGCGTCATCTGCCATTGAGGATCCCTCTGAAGTGCCATCAGATGCTATCAAAGATTCTTCTGCCAAAACTGAAGTGAATGTCTCCCAATTGGACCATTGCAAGTCAGGAACTGAACAAGATAATAGCAGCGCCATTGTTGAAGAAAGTTCATTGAAAGTTGTTGAGAAGCATAATGCAGCTGAAAGTCAAAACTCTGATCATCCCAAGCAACAAACGAGTGAAGATAATGCCAATGATCAACCATCAAAGCGTCAAAGGACAGAAGAATAA 1473 0.4325 MEARPAFSIERSSAKQLSSMGISGALSSSLPVHPSSIEETYSELPDSQQAFVEKEHMARPLTHSSHLNSSGAVGHLFSSSPGYSTDLHHSSLSPHGKHPRNPHFISQSSSNMASLPLSYSSSTGPLPSTTSSCYSKESNASWSTDSLPNILDFPVNTSINDSQIESSACNIMAPDECGKRNDWQEWADQLINDDDALTPNWNDILVDPGIHDLEPKVSCQTSKSSSQFPGQQSQGHQQLSASSGEKHVSVPPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKKLTPMEEMSSLDLKTGIELTEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEQQCKSGVEKFTAASSAIEDPSEVPSDAIKDSSAKTEVNVSQLDHCKSGTEQDNSSAIVEESSLKVVEKHNAAESQNSDHPKQQTSEDNANDQPSKRQRTEE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2559 490 MobiDBLite consensus disorder prediction 84 107 - -
Prci1g2559 490 MobiDBLite consensus disorder prediction 420 449 - -
Prci1g2559 490 MobiDBLite consensus disorder prediction 404 490 - -
Prci1g2559 490 MobiDBLite consensus disorder prediction 215 264 - -
Prci1g2559 490 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Prci1g2559 490 FunFam Myb family transcription factor 261 319 - -
Prci1g2559 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Prci1g2559 490 Coils Coil 350 370 - -
Prci1g2559 490 MobiDBLite consensus disorder prediction 316 337 - -
Prci1g2559 490 Gene3D - 261 320 - -
Prci1g2559 490 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Prci1g2559 490 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 232 481 IPR044848 GO:0003700
Prci1g2559 490 MobiDBLite consensus disorder prediction 465 479 - -
Prci1g2559 490 MobiDBLite consensus disorder prediction 217 261 - -
Prci1g2559 490 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Prci1g2559 490 MobiDBLite consensus disorder prediction 24 45 - -
Prci1g2559 490 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2559 Prci-Chr1 45341651 45347857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2559 1 404 G2-like Transcription Factor Family AT4G28610 50.602 2.58e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci1g2559 Myb_DNA-binding 9.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2559 - - gmx:100810560 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2559 1 45341651 45347857 Prci3g3179 3 42950284 42956432 CCT
Prci1g2559 1 45341651 45347857 Prci1g2559 1 45341651 45347857 ECH
Prci1g2559 1 45341651 45347857 Prci3g3179 3 42950284 42956432 ECH