Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2554 ATGAAAAGTAGAATCAGAGAAAGGAGGAGGGGCGATATCAGCAGGAGTTTGCGGAAGATAATGAAGTGCCTATGTTCAGGGGAGCAGTTAAGAGGAGCAAACGAAATGGTTCCTTCATCTGAATCTCTTGCAACCAAGGATTATTCAATAAGTGGGGATTCTTGCCCAGCTGGACAAGTTGACAAGAAGAGGCCAGACACTGGTAATATAGAAGAAGCTGAATCATCCCTTCGTGAGAGTGGTTTCTTGAATTATGAGGAAGCTAGAGCTCTGTTGGGAAGATATGAATTTCAGAAAGGCAACATTGAAGCTGCTTTACATGTTTTTGAAGGAATAGATATAGGTTCTGTGACTCCTAAAATCAAAATTTCCCTTGCCCAAAGGGCAGAACAACCTAAGAGACATAAGAGACATTCCCAGCATTATGCTGCACCCCCAATGTCAATACATGCTGTTGGCCTGCTGTTGGAAGCAGTCCTCCTGAAAGCAAAATCGTTGCAGGCTCTTGGAAGATTTAAAGAAGCTGCCCAGTCTTGCAAAGTTATTCTGGACATAGTTGAATCTTCATTACCTGAAGGTTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAGACTCTGAGCAATGCAGTTGAGTTGCTTCCAGAACTATGGAAACTTGCTGATAGTCCACGTGAAGCTATTGTGTCTTATAGGCGGGCACTCCTTCACCAATGGAATCTTGATGCAAAGACTACAGCAAAGATTCAGAAAGAGTTCGTCATATTTCTTCTATATAGTGGGGGGGAAGCAAGCCCCCCAAATCTCCGTTCCCAAATGGACAGCTCGTTTGTGCCCAGAAACAACATAGAAGAGGCTATACTTCTTTTGATGATTTTGGTAAGAAAAATCACTTTAAAAAGAATTGAGTGGGATCCTTCAATTTTAGACCATCTTTCATTTGCTCTATCTGTTTCTGGGGATTTGACAACTCTAGCTTATCAATATAAAGAATTGCTCCCTGGGACTGTCAACCGAAGAGAAAGGTATTTTACTCTTGCTCTCTGTTATTTTGGTGCTGGAAAGGACTTGATAGCTCTGGATCTTCTCAGAAAAGTGTTGAGTAGTAAAGAGGATCCAAAACATATTCCAGCTTTGTTAATGGCATCTAAAATATGTTCTAAGAACCCTTGTCTTGCAGAAGAAGGGGTAAACTTTGCTTCCAGAGTGCTTGAGAGCTTGGATGATAGATGTGATAAGTTAGAAAGTGTAGCCCATTGCTTACTTGGCATTTCAAATTCAGCAAATTCAAAATTAGCCATTTCTGATTCCGAGAGGTTTGAGAGTCAATCTGAGGCACTTCGTGCTTTGGAAACTGCTGGCAAAATGACTCGAATGAGAGACCACAATGTATTATACCATCTAAGTTTAGAAAATGCGGAACAGAGGAAGTTAGATGCTGCACTTTATTATGCAAAATGCCTTCTAAAACTAGAAGCCGGGTCTAGTGTCAAAGGATGGCTGTTGTTAGCTCGGATATTATCGGCTAAAAAACGGTTTTCAGATGCTGAATCTATTATCAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGGGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAATTAAGGAGTGCCATTGAGACATATACGCAACTTCTTGCTGTTTTTCAAGTTCAAAAGAAAGCATTTGGTTCTGGGAAGAAGCTATTAAAGGAGAACAGAGATCATGCTAGGAACCTGGAAGTCGAAGTATGGCATGATCTTGCCTGTGTATATATAAGCCTGTCTCAGTGGCATGATGCTGAGATGTGTCTTTTTAAGTCTAAGACAATCAAGCTTTACTCTGCTTCCAGATGCCATACAACAGGAATACTGTGTGAAGCAAAGGGTTTGTACAAAGAGGCTTTGAAGGCTTTTGATGATGCTTTGAACATTGATCCCAATTATGTCCCAAGCTTGATTTCCACTGCCTTGGTTCTGAGACGGTGCAGTGGTAGTAAGGAATCACATGCTGTAGCGAGAAGCTTTTTGATGGATGCTCTGCGCCATGATAGCTTGAATGCTGGTGCATGGTATAATCTTGGCCTTGTTCACAGGGATGAGGGTTCGGTCTCGTCATTAATGGAAGCTGCGGAATGTTTCGAGGCCGCTCATTTTCTTGAAGAAACCTCGCCTGTTGAACCTTTCAGATGA 2217 0.4186 MKSRIRERRRGDISRSLRKIMKCLCSGEQLRGANEMVPSSESLATKDYSISGDSCPAGQVDKKRPDTGNIEEAESSLRESGFLNYEEARALLGRYEFQKGNIEAALHVFEGIDIGSVTPKIKISLAQRAEQPKRHKRHSQHYAAPPMSIHAVGLLLEAVLLKAKSLQALGRFKEAAQSCKVILDIVESSLPEGLPENFGAECKLQETLSNAVELLPELWKLADSPREAIVSYRRALLHQWNLDAKTTAKIQKEFVIFLLYSGGEASPPNLRSQMDSSFVPRNNIEEAILLLMILVRKITLKRIEWDPSILDHLSFALSVSGDLTTLAYQYKELLPGTVNRRERYFTLALCYFGAGKDLIALDLLRKVLSSKEDPKHIPALLMASKICSKNPCLAEEGVNFASRVLESLDDRCDKLESVAHCLLGISNSANSKLAISDSERFESQSEALRALETAGKMTRMRDHNVLYHLSLENAEQRKLDAALYYAKCLLKLEAGSSVKGWLLLARILSAKKRFSDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLRSAIETYTQLLAVFQVQKKAFGSGKKLLKENRDHARNLEVEVWHDLACVYISLSQWHDAEMCLFKSKTIKLYSASRCHTTGILCEAKGLYKEALKAFDDALNIDPNYVPSLISTALVLRRCSGSKESHAVARSFLMDALRHDSLNAGAWYNLGLVHRDEGSVSSLMEAAECFEAAHFLEETSPVEPFR 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2554 738 SUPERFAMILY TPR-like 342 615 IPR011990 GO:0005515
Prci1g2554 738 SUPERFAMILY TPR-like 536 725 IPR011990 GO:0005515
Prci1g2554 738 Gene3D Tetratricopeptide repeat domain 66 570 IPR011990 GO:0005515
Prci1g2554 738 ProSiteProfiles TPR repeat profile. 624 657 IPR019734 GO:0005515
Prci1g2554 738 MobiDBLite consensus disorder prediction 52 73 - -
Prci1g2554 738 SMART tpr_5 341 374 IPR019734 GO:0005515
Prci1g2554 738 SMART tpr_5 696 732 IPR019734 GO:0005515
Prci1g2554 738 SMART tpr_5 590 623 IPR019734 GO:0005515
Prci1g2554 738 SMART tpr_5 156 189 IPR019734 GO:0005515
Prci1g2554 738 SMART tpr_5 534 567 IPR019734 GO:0005515
Prci1g2554 738 SMART tpr_5 498 531 IPR019734 GO:0005515
Prci1g2554 738 SMART tpr_5 624 657 IPR019734 GO:0005515
Prci1g2554 738 Gene3D Tetratricopeptide repeat domain 571 734 IPR011990 GO:0005515
Prci1g2554 738 PANTHER PROTEIN NPG1 21 738 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2554 Prci-Chr1 45282340 45288306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2554 13 738 Calmodulin-binding Proteins AT4G28600 57.745 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2554 K21843 - gmx:100800762 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2554 1 45282340 45288306 Prci1g2554 1 45282340 45288306 ECH