Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2525 ATGTCTTGGCTATGCCGGCCTTCCCATGAGCCAGAAATTCCCCCAGTGGGATTCAAGGTTATTCATGGCGATTGTTTCAACATGATCAGACCACATGTGCATGAATCTTGGGACTATCCGAATAATAATGTTGGGCTATCCTCGTCAGCTGCAACATCATCATCATCATCAATATTAATCCCATTTTCAAAGCCACCAGCCATTGACACCACCACCAACAGTACTGTAAACTTGGCAACCAACGAGTTTTCAGATTGGGTGGAGCATATTACCAAACACCTTGTGGACGACTTACCCGCAGCTGAAACCACATCTGATCATAACTTGCTTCATCCTTATAACCACTGCCAAACAGGGTCTACTTCTCATGACAACCTCGTACCCACACCAGTAGTTTCACCTGTTCTATACCCTAGGAATAAGGGTCCCTTCAACAATGATGACCTGCAAATTCAAATTCAAACTCAAACGAACCCATCATCAGTAGATCACGATCAAAGCAATGATGTGTTACACCTCTTAACACTTCTAATGGAGTGTGCAGTGGCAATCTCAGTAGACAACCTCAGTGAGGCACACAGAATGTTGGTGGAGCTAACCCAACTGGCCTCACCGTACAAGCCATCCTGTGGAGAGCGTATTGTGGCGTATTTCGCTAAAGCCATGACTAGCAGAGTAATGAACTCGTGGCTCGGAGTATTTTCCCCTTTGATTGACCACAGAAGCATCCACTCTTCGCTCCAGGTGTTCAACAATATTTCGCCTTTCATCAAGTTCGCACATTTCACTTCCAATCAAGCCATTCTTGAAGCAGTGCATTGCTGTGATAGTATTCATATCATAGACTTAGACATCATGCAGGGTCTTCAATGGCCGGCTTTCTTCCACATCCTCGCCAACAGAATGGAGGGACGACCACGCCTTCGAATGACAGGCATGGGAGCTTCAATGGACATCCTCGTCGAGACAGGCAAGCAGCTCACGAACTTCGCAAAAAGGCTCGGAATGTCGTTTCATTTCCAACCAATCGCGAGGAAGTTCGGGGAAATCGAAGATGTCTCTAAGGTGCAAGTAAGACCCGGCGAGACAATCGCCGTCCACTGGCTGCAACACTCGCTGTACGACGCCACAGGACCAGACTGGAAAACTCTGAGACTTCTTGAAGAACTAGAGCCGAGAATCATAACTCTTGTGGAACAAGATGTTTCAAGCGGCGGGTCGTTTTTGGATCGTTTTGTCGGGTCTTTACACTATTATTCCACCGTGTTTGATTCTCTGGGAGCTTATATGGCCAGCGAGGACCTTAACAGGCACAAGGTTGAACACGGGCTTCTGTCCAGAGAGATAAATAACATATTGGCCATAGGAGGACCAGCAAGAAGTGGAGAAGACAAGTGCAGACAGTGGAGAAGTGAGCTTGCGAGGATTGGTTTTCTGCAGGTTCCAATGAGCCCTAACTCTATGGCTCAAGCTCAATTGATATTGAACATGTTCTCACCTCCTCATCATGTCCATGGCTATACTCTTGCTCAAGTCGATGGCACTCTCAGGCTTGGATGGAAGAACACTGGCCTGTATACAGCTTCCGCATGGACATGTTACAATTCCACTAATAATAAACACTAG 1626 0.4668 MSWLCRPSHEPEIPPVGFKVIHGDCFNMIRPHVHESWDYPNNNVGLSSSAATSSSSSILIPFSKPPAIDTTTNSTVNLATNEFSDWVEHITKHLVDDLPAAETTSDHNLLHPYNHCQTGSTSHDNLVPTPVVSPVLYPRNKGPFNNDDLQIQIQTQTNPSSVDHDQSNDVLHLLTLLMECAVAISVDNLSEAHRMLVELTQLASPYKPSCGERIVAYFAKAMTSRVMNSWLGVFSPLIDHRSIHSSLQVFNNISPFIKFAHFTSNQAILEAVHCCDSIHIIDLDIMQGLQWPAFFHILANRMEGRPRLRMTGMGASMDILVETGKQLTNFAKRLGMSFHFQPIARKFGEIEDVSKVQVRPGETIAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVSSGGSFLDRFVGSLHYYSTVFDSLGAYMASEDLNRHKVEHGLLSREINNILAIGGPARSGEDKCRQWRSELARIGFLQVPMSPNSMAQAQLILNMFSPPHHVHGYTLAQVDGTLRLGWKNTGLYTASAWTCYNSTNNKH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2525 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 147 528 IPR005202 -
Prci1g2525 541 ProSiteProfiles GRAS family profile. 164 532 IPR005202 -
Prci1g2525 541 Pfam GRAS domain family 174 532 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2525 Prci-Chr1 45153721 45156101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2525 179 532 GRAS Transcription Factor Family AT3G54220 52.355 2.97e-129 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Prci1g2525 GRAS 1.5e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2525 - - pcin:129286457 1093.95