Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2520 ATGGATTCTGCCAGGGGTTGGTTTCACAAGTTTCATCCAAGGGATAAAATGAGGTCTTCTTCGAAGAAGAAAGAGGGTTCTGGGGGAATCGAAGATTCAGATTCACAGCTGGATGAAGAAGCTCTTTCCAATGTAACGAAACAGAAAGTTGCGGCGGCAAAGCAGTATATAGAGAACCATTATAAGGAGCAAATGAAGAGCCTTCAGGAAAGAAAGGAGCGTCGAACTATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAAGACCAAAACAACCTTTTCAAGTTTTTGGAGAAAAAGGAAACTGAATACATGCGGCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAATTGTTGACTATGATTGGAAAGGGTGCATTCGGAGAGGTTAGAATCTGCAGGGAAAAGACAACAGGCCATGTATTTGCGATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTAGAACATGTCAGAGCTGAAAGGAACCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTACTGTTCTTTCCAGGATGATGACTACCTGTACCTGATTATGGAGTATCTACCTGGTGGGGATATGATGACTTTACTTATGAGAAAGGATATCTTGTCTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCGATTGAATCTATACATAAACACAATTATATCCATAGGGATATTAAACCTGACAATTTGTTATTGGATAGATACGGACATTTAAGACTGTCAGATTTTGGTCTTTGTAAACCATTAGATTGCAGCATACTTCAAGAAGAAGACTTTTCCGTAGGTCAGTGTGTGAATGGTTCTACACAGAATGATGAACGTGGATCTTCAAATCGCACACAACAAGAACAATTGCAACACTGGCAAAAGAACAGGAGGACACTCGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCTCTTGGAGCTATTATGTATGAAATGTTGGTAGGATATCCTCCTTTTTATTCTGACGATCCAATGACAACATGCAGGAAGATAGTAAACTGGAAAACTCACTTGAAATTTCCTGAAGAAGCCATGCTATCTCCTGAAGCTAAAGATTTGATCAGTAAGCTATTGTGTAATGTGAATGAGAGGCTGGGATCAAAAGGCGCAGGTGAAATAAAGGCTCATTCATTTTTCGAAGGTATTGAATGGGATAAGCTATACCAAATGGAAGCTGCATTTATTCCTGAGGTTAATGATGACTTGGATACTCAAAATTTTGAGAAGTTTGATGAGTCCGACAACTGCAGTCAACCATCTTCAAGAAGTGGTCCATGGAGGAAGATGCTCTCATCTAAAGACATGAATTTTGTCGGATACACGTATAAGAACTTTGAAATTGTGAATGACTATCAAGTTGCTGGCATGGCTGAATTGAAAAAGAAAACCTCCAAAGTTAAGAGGCCGTCCATCAAGTCCCTTTTTGATGATGAGATCGCTGAAGCATCAGAAGCCTCTGAGCCTTCTGCAAGCAATGAACCAGGTTCAGACAGTTTTAGGAGCCATAAACTCAAGCCAGCTAACAGCATTTTGACTTGCTCCATTGATGCAACTTTTTTAAGCTATTTTGTGCTTGGACGTGTTCATGGCTACATTTCTAGTTATTTGGCAGGCAGATAG 1734 0.4025 MDSARGWFHKFHPRDKMRSSSKKKEGSGGIEDSDSQLDEEALSNVTKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLFKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRICREKTTGHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDILSEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSILQEEDFSVGQCVNGSTQNDERGSSNRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVNWKTHLKFPEEAMLSPEAKDLISKLLCNVNERLGSKGAGEIKAHSFFEGIEWDKLYQMEAAFIPEVNDDLDTQNFEKFDESDNCSQPSSRSGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVAGMAELKKKTSKVKRPSIKSLFDDEIAEASEASEPSASNEPGSDSFRSHKLKPANSILTCSIDATFLSYFVLGRVHGYISSYLAGR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2520 577 MobiDBLite consensus disorder prediction 520 539 - -
Prci1g2520 577 Gene3D Transferase(Phosphotransferase) domain 1 203 435 - -
Prci1g2520 577 FunFam Non-specific serine/threonine protein kinase 316 435 - -
Prci1g2520 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 473 - -
Prci1g2520 577 MobiDBLite consensus disorder prediction 1 31 - -
Prci1g2520 577 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Prci1g2520 577 SUPERFAMILY Protein kinase-like (PK-like) 92 471 IPR011009 -
Prci1g2520 577 CDD STKc_NDR_like 117 481 - -
Prci1g2520 577 SMART serkin_6 119 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g2520 577 Pfam Protein kinase domain 120 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g2520 577 MobiDBLite consensus disorder prediction 283 303 - -
Prci1g2520 577 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Prci1g2520 577 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Prci1g2520 577 FunFam Non-specific serine/threonine protein kinase 203 270 - -
Prci1g2520 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Prci1g2520 577 CDD MobB_NDR_LATS-like 53 114 - -
Prci1g2520 577 MobiDBLite consensus disorder prediction 1 42 - -
Prci1g2520 577 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Prci1g2520 577 MobiDBLite consensus disorder prediction 523 539 - -
Prci1g2520 577 Gene3D Phosphorylase Kinase; domain 1 117 446 - -
Prci1g2520 577 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Prci1g2520 577 ProSiteProfiles Protein kinase domain profile. 119 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2520 Prci-Chr1 45139081 45149613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2520 1 513 AGC Kinase Gene Family AT2G20470 79.198 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Prci1g2520 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2520 K08790 - gmx:100820558 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3189 3 43049464 43055873 Prci1g2520 1 45139081 45149613 CCT