Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2496 ATGGGTCTCAGAGACATTGGTGCTTCACTACCTCCTGGGTTTCGGTTTTATCCCAGTGATGAAGAACTGGTGTGTCATTATCTCTACAAAAAGATCTCAAACGAGGAGGCTCTTAAGGGAACTTTGGTCGAAATCGACTTGCATACATGCGAGCCGTGGCAGCTTCCGGAGGTGGCTAAGCTCAACGCGAATGAGTGGTACTTCTTCAGCTTCCGCGACCGCAAATACGCGACGGGATTCCGGACCAATAGGGCGACGACATCTGGATATTGGAAAGCGACGGGAAAGGATCGAACGGTGGTGGATCCAATCACACGAGAGGTCGTAGGGATGAGGAAGACGCTGGTGTTCTACAGGAACAGAGCTCCCAATGGTATCAAAACGGGTTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAAGACTGGGTTTTGTGTAGAGTATTTCACAAAAGCAAATCATCAGACGACGACAGCAACGATATCAGTGCCAAACTCATGTTAGATTCCATTTCATCTCATTCATTAACTCCGGCCTCTTCATCTTCTCCAACCAACCATACCTTCCCTCTCGTCGGCTACAACCATATTTCCTCTTCGTCTTCCTCGATCCCCACCTTCATTCACCATGACAATACTACTCAAGCCAACCATTATCATCATTCTAATTCTCTCGTCAACTTTCTTCAATTTTCTCGGGAAACAAACACGGCCGCCACCAGCACTGTTACTCAGGATCGGATCAGCCCCAGTAGAGGTGGGGATGATGGGTATGGCTTCTTCTGGGACATGGGCCTCGAAGATAATAATAACAGCTTTCAGAATGGCGTCGTCGACGCAATCAGATCCTTCGAGGTTGATAATAACAGCATGGTCTTGTTATGA 900 0.4822 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKISNEEALKGTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKSSDDDSNDISAKLMLDSISSHSLTPASSSSPTNHTFPLVGYNHISSSSSSIPTFIHHDNTTQANHYHHSNSLVNFLQFSRETNTAATSTVTQDRISPSRGGDDGYGFFWDMGLEDNNNSFQNGVVDAIRSFEVDNNSMVLL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2496 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 219 - -
Prci1g2496 299 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Prci1g2496 299 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Prci1g2496 299 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Prci1g2496 299 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2496 Prci-Chr1 45063531 45067607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2496 6 183 NAC Transcription Factor Family AT1G56010 52.688 5.26e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1g2496 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2496 - - gmx:100783645 412.92