Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2490 ATGATTTTTTGTTTGGTCTTTGTTGCAGTAATTATGGAATCAAAAAATAGAAGGAAATCTGTGAAATCTAAAAGTAAAGAAATCCCTTCAGCCCCCCCTGGTTTTAGATCCCTTACTTCTTTCATGCTAAAAAAGGTTGCAAAGACTGATAAATCTGAATGTGATCCAATCTGCATGGAGAGTATATTGAAGCTAAATGATGCTGCTGCATATAGGGCAATTCTTAAGCATCGTCCATGGATACTTTTCGATCATAGCAACTGTGACCCTGAGAAATCCAACACAGAGGATTTCCCTCAGGTAACTGCAAGGTGGTGCCCTGAGGATGCAAGAAGAGATGTCCTTGATGAAGTTCAAATGTTCCACCCAACAGAAGAGGAATTTAAAGACACACTTGAATATATTGCAAGCATACGTTCCAAAGCAGAGCCTTACGGAATCTGTCGTATTGTTCCTCCTCCTTCTTGGCAACCACCATGTCTTCCTGATGAAAAAAACATATGGGAAAACTCTAAATTTTCTACTAAGATTCAGCGGATTGATGGCCTCCAAGTTCAGTGCCAGCAAGAAGTTATTGACAACCCTTACAAAAATGTAGAGACCAAGACCAGAAAAGAGCCGGGAGCAGCTTTGGACTCTCAACCTGGTAATGAAAACCCCCATGATGTTAAAGACTTAGAGTCTAAACCTGGCCCTACCTTCAGTCTCAGTACATTTAAGAAATTTGCTGATGATTTCAAGGCCAAGTACTTCCACCGTGACAATAATGTCATGGGTTCTGATGAAAAGTGGGAGCCATCTGTGGAAAATGTTGAGGGAGAGTATGGACGAATTACTCAAAATCCAACTGATGAAATTGAGGTGGTTTTTGGTAATGACTTGGGGACTGGAGTTTTAAGCAGTGGATTTCCAATGGTGTCTGATTCTGTGGAGTCGTTAAATCATCCTGAATGTATGAGATCTGGATGGAATTTAAATAATATGCTTACACAAGCTGGTTCTCTCCTTTCATTTGAAAGCTCCGAGGTTTCTAGCAAATTTGCCCCTCAGGTTCACGTTGGAATGTGCTTTTCTTCATTCAATTGGAAAGTGGAAGAGCACCAGTTGTACTCGTTGTGTTACATGCATGTGGGAGAGCCTAGAGTTTGGTATAGCATTCCGGGAAGATTTGCTGCTGACTTTGAAACAGTGAGGAAGAAGCATCTCCCAATTTTGTTTGCAGAAGAGTCTGATTTGCTTGACAATTTGCAGATGCAGTTATCCTCCGCCATATTGAAGTCAGAGGGTGTACCAGTATATCGCTGTGTCCAGTATCCCCGGGAGTTTGTTCTTGTCTTCCCAGGAGCATACCATTCCGGATTTGATTGTGGTTTCAATTTTTCTGAATCAGTCAGTTTTGCTCCTCTTGATTGGCTGCTTCATGGACAGAAAGTTGTAGAGTTATATTGTGAACAAAGGCGAAGGACATCAATTTCATACGATAAGCTGTTGCTTGGGGCAGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGGACTCTGCGGGATGGGTACCCCAGATAATTTATACTGGAAAGATGCATGTGGAAGGGATGGGATATTAACAAAAGCTTTTGATTTACGGAGAAAGAGTGAAAGTTCAAAGAGGGAATTTCTTTGCGCTTCTCTGAAGTCACGGATAATGGAAAAAGATTTCGATGTCACTTGCAAAAGAGAATGTTGTGTATGTCTCCGTGACTTGCACTTATCTGCCATAAGTTGTCCATGTTCGACCAACAAATTTGCATGTCTTAATCATGGAAAGCAGCTGTGTTTTTGCCCTTGGAGTGACAAATTTATCCTCTGGCGATATGAAATCAGTGAGTTGAATACCCTTTGTCTTGCTTTGGAGGGAAAAGCAAGTGTTATCCACAAATGGGCTAAAGTCGATCTTGGATTAACTGTGCACTCTGTCGCCTCCAAAGCATCGAAACAGAACCCAGGAAATGCAAGTGCTTCATCGTCTACTGCCTTAGCAAGAGTGGCATTTTTGAATTCACTGAAACGGAAAAGAGATGCAGTCGAGCCCAAAGGTTCGGGCACTGATGGTATCTCTCCTAGCATTGAGGCAAAATTGAAGCCACCGTTACCTGACTCAACATGTGTAGGTAAATCGAAGGCAAAACAGAAAAAGGTGGGTCACCAATCTACAGCAAGACACAAGAGTGGAGTCAATTCTGCTCCTGCCATTAAACCTGATCTCAAGTCGCGCAAGGTTCAGTCATCAATTCCAAACTTGGCTGAAAATGACCCAAAAGTGTCTAGGGATTTTCTAGGTCTTAGTTTAACGTCAGGTTATGTGTCACTTCTTCCGGAAATCAGGTCATTTGATGTTTCTTCAGATAGTTCAGCTTCATCATCAGGATCCGATGATGACACTTGA 2421 0.4197 MIFCLVFVAVIMESKNRRKSVKSKSKEIPSAPPGFRSLTSFMLKKVAKTDKSECDPICMESILKLNDAAAYRAILKHRPWILFDHSNCDPEKSNTEDFPQVTARWCPEDARRDVLDEVQMFHPTEEEFKDTLEYIASIRSKAEPYGICRIVPPPSWQPPCLPDEKNIWENSKFSTKIQRIDGLQVQCQQEVIDNPYKNVETKTRKEPGAALDSQPGNENPHDVKDLESKPGPTFSLSTFKKFADDFKAKYFHRDNNVMGSDEKWEPSVENVEGEYGRITQNPTDEIEVVFGNDLGTGVLSSGFPMVSDSVESLNHPECMRSGWNLNNMLTQAGSLLSFESSEVSSKFAPQVHVGMCFSSFNWKVEEHQLYSLCYMHVGEPRVWYSIPGRFAADFETVRKKHLPILFAEESDLLDNLQMQLSSAILKSEGVPVYRCVQYPREFVLVFPGAYHSGFDCGFNFSESVSFAPLDWLLHGQKVVELYCEQRRRTSISYDKLLLGAARKAVRAQFEIGLCGMGTPDNLYWKDACGRDGILTKAFDLRRKSESSKREFLCASLKSRIMEKDFDVTCKRECCVCLRDLHLSAISCPCSTNKFACLNHGKQLCFCPWSDKFILWRYEISELNTLCLALEGKASVIHKWAKVDLGLTVHSVASKASKQNPGNASASSSTALARVAFLNSLKRKRDAVEPKGSGTDGISPSIEAKLKPPLPDSTCVGKSKAKQKKVGHQSTARHKSGVNSAPAIKPDLKSRKVQSSIPNLAENDPKVSRDFLGLSLTSGYVSLLPEIRSFDVSSDSSASSSGSDDDT 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2490 806 PANTHER LYSINE-SPECIFIC DEMETHYLASE 113 725 - -
Prci1g2490 806 SMART JmjN_1 117 158 IPR003349 -
Prci1g2490 806 MobiDBLite consensus disorder prediction 685 764 - -
Prci1g2490 806 Pfam JmjC domain, hydroxylase 350 466 IPR003347 -
Prci1g2490 806 Gene3D Cupin 103 467 - -
Prci1g2490 806 ProSiteProfiles JmjN domain profile. 118 159 IPR003349 -
Prci1g2490 806 SMART cupin_9 320 483 IPR003347 -
Prci1g2490 806 Pfam C5HC2 zinc finger 573 625 IPR004198 -
Prci1g2490 806 SUPERFAMILY Clavaminate synthase-like 282 505 - -
Prci1g2490 806 ProSiteProfiles JmjC domain profile. 317 483 IPR003347 -
Prci1g2490 806 MobiDBLite consensus disorder prediction 196 230 - -
Prci1g2490 806 Pfam jmjN domain 121 152 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2490 Prci-Chr1 45042841 45049498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2490 12 653 JUMONJI Transcription Factor Family AT1G08620 45.780 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci1g2490 JmjC 8.7e-33 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2490 K11446 - pcin:129315581 1578.92