Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2489 ATGGTTACATTGAAAAGGGCAATTCTTAAGCATCGTCCATGGATACTTTTCGATCATAGCAACTGTGACCCTGAGAAATCCAACACAGAGGATTTCCCTCAGGGTTTTTCTTCAAACGCTTGTCGTCCAAAAGGGGTTTCTCTTGGTTGTCCAGATTGTAATGATTGTCTGAAGGTAACTGCAAGGTGGTGCCCTGAGGATGCAAGAAGAGATGTCCTTGATGAAGTTCAAATGTTCCACCCAACAGAAGAGGAATTTAAAGACACACTTGAATATATTGCAAGCATACGTTCCAAAGCAGAGCCTTACGGAATCTGTCGTATTGTTCCTCCTCCTTCTTGGCAACCACCATGTCTTCCTGATGAAAAAAACATATGGGAAAACTCTAAATTTTCTACTAAGATTCAGCGGATTGATGGCCTCCAAGTTCAGTGCCAGCAAGAAGTTATTGACAACCCTTACAAAAATGTAGAGACCAAGACCAGAAAAGAGCCGGGAGCAGCTTTGGACTCTCAACCTGGTAATGAAAACCCCCATGATGTTAAAGACTTAGAGTCTAAACCTGGCCCTACCTTCAGTCTCAGTACATTTAAGAAATTTGCTGATGATTTCAAGGCCAAGTACTTCCACCGTGACAATAATGTCATGGGTTCTGATGAAAAGTGGGAGCCATCTGTGGAAAATGTTGAGGGAGAGTATGGACGAATTACTCAAAATCCAACTGATGAAATTGAGGTGGTTTTTGGTAATGACTTGGGGACTGGAGTTTTAAGCAGTGGATTTCCAATGGTGTCTGATTCTGTGGAGTCGTTAAATCATCCTGAATGTATGAGATCTGGATGGAATTTAAATAATATGCTTACACAAGCTGGTTCTCTCCTTTCATTTGAAAGCTCCGAGGTTTCTAGCAAATTTGCCCCTCAGGTTCACGTTGGAATGTGCTTTTCTTCATTCAATTGGAAAGTGGAAGAGCACCAGTTGTACTCGTTGTGTTACATGCATGTGGGAGAGCCTAGAGTTTGGTATAGCATTCCGGGAAGATTTGCTGCTGACTTTGAAACAGTGAGGAAGAAGCATCTCCCAATTTTGTTTGCAGAAGAGTCTGATTTGCTTGACAATTTGCAGATGCAGTTATCCTCCGCCATATTGAAGTCAGAGGGTGTACCAGTATATCGCTGTGTCCAGTATCCCCGGGAGTTTGTTCTTGTCTTCCCAGGAGCATACCATTCCGGATTTGATTGTGGTTTCAATTTTTCTGAATCAGTCAGTTTTGCTCCTCTTGATTGGCTGCTTCATGGACAGAAAGTTGTAGAGTTATATTGTGAACAAAGGCGAAGGACATCAATTTCATACGATAAGCTGTTGCTTGGGGCAGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGGACTCTGCGGGATGGGTACCCCAGATAATTTATACTGGAAAGATGCATGTGGAAGGGATGGGATATTAACAAAAGCTTTTGATTTACGGAGAAAGAGTGAAAGTTCAAAGAGGGAATTTCTTTGCGCTTCTCTGAAGTCACGGATAATGGAAAAAGATTTCGATGTCACTTGCAAAAGAGAATGTTGTGTATGTCTCCGTGACTTGCACTTATCTGCCATAAGTTGTCCATGTTCGACCAACAAATTTGCATGTCTTAATCATGGAAAGCAGCTGTGTTTTTGCCCTTGGAGTGACAAATTTATCCTCTGGCGATATGAAATCAGTGAGTTGAATACCCTTTGTCTTGCTTTGGAGGGAAAAGCAAGTGTTATCCACAAATGGGCTAAAGTCGATCTTGGATTAACTGTGCACTCTGTCGCCTCCAAAGCATCGAAACAGAACCCAGGAAATGCAAGTGCTTCATCGTCTACTGCCTTAGCAAGAGTGGCATTTTTGAATTCACTGAAACGGAAAAGAGATGCAGTCGAGCCCAAAGGTTCGGGCACTGATGGTATCTCTCCTAGCATTGAGGCAAAATTGAAGCCACCGTTACCTGACTCAACATGTGTAGGTAAATCGAAGGCAAAACAGAAAAAGGTGGGTCACCAATCTACAGCAAGACACAAGAGTGGAGTCAATTCTGCTCCTGCCATTAAACCTGATCTCAAGTCGCGCAAGGTTCAGTCATCAATTCCAAACTTGGCTGAAAATGACCCAAAAGTGTCTAGGGATTTTCTAGGTCTTAGTTTAACGTCAGGTTATGTGTCACTTCTTCCGGAAATCAGGTCATTTGATGTTTCTTCAGATAGTTCAGCTTCATCATCAGGATCCGATGATGACACTTGA 2295 0.4253 MVTLKRAILKHRPWILFDHSNCDPEKSNTEDFPQGFSSNACRPKGVSLGCPDCNDCLKVTARWCPEDARRDVLDEVQMFHPTEEEFKDTLEYIASIRSKAEPYGICRIVPPPSWQPPCLPDEKNIWENSKFSTKIQRIDGLQVQCQQEVIDNPYKNVETKTRKEPGAALDSQPGNENPHDVKDLESKPGPTFSLSTFKKFADDFKAKYFHRDNNVMGSDEKWEPSVENVEGEYGRITQNPTDEIEVVFGNDLGTGVLSSGFPMVSDSVESLNHPECMRSGWNLNNMLTQAGSLLSFESSEVSSKFAPQVHVGMCFSSFNWKVEEHQLYSLCYMHVGEPRVWYSIPGRFAADFETVRKKHLPILFAEESDLLDNLQMQLSSAILKSEGVPVYRCVQYPREFVLVFPGAYHSGFDCGFNFSESVSFAPLDWLLHGQKVVELYCEQRRRTSISYDKLLLGAARKAVRAQFEIGLCGMGTPDNLYWKDACGRDGILTKAFDLRRKSESSKREFLCASLKSRIMEKDFDVTCKRECCVCLRDLHLSAISCPCSTNKFACLNHGKQLCFCPWSDKFILWRYEISELNTLCLALEGKASVIHKWAKVDLGLTVHSVASKASKQNPGNASASSSTALARVAFLNSLKRKRDAVEPKGSGTDGISPSIEAKLKPPLPDSTCVGKSKAKQKKVGHQSTARHKSGVNSAPAIKPDLKSRKVQSSIPNLAENDPKVSRDFLGLSLTSGYVSLLPEIRSFDVSSDSSASSSGSDDDT 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2489 764 Pfam JmjC domain, hydroxylase 308 424 IPR003347 -
Prci1g2489 764 SMART cupin_9 278 441 IPR003347 -
Prci1g2489 764 Gene3D Cupin 61 425 - -
Prci1g2489 764 Pfam jmjN domain 79 110 IPR003349 -
Prci1g2489 764 ProSiteProfiles JmjC domain profile. 275 441 IPR003347 -
Prci1g2489 764 PANTHER LYSINE-SPECIFIC DEMETHYLASE 71 683 - -
Prci1g2489 764 SMART JmjN_1 75 116 IPR003349 -
Prci1g2489 764 Pfam C5HC2 zinc finger 531 583 IPR004198 -
Prci1g2489 764 MobiDBLite consensus disorder prediction 643 722 - -
Prci1g2489 764 SUPERFAMILY Clavaminate synthase-like 240 463 - -
Prci1g2489 764 MobiDBLite consensus disorder prediction 154 188 - -
Prci1g2489 764 ProSiteProfiles JmjN domain profile. 76 117 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2489 Prci-Chr1 45042841 45049498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2489 13 611 JUMONJI Transcription Factor Family AT1G08620 49.117 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci1g2489 JmjC 8e-33 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2489 K11446 - pcin:129315581 1520.37