Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2487 ATGATTTTTTGTTTGGTCTTTGTTGCAGTAATTATGGAATCAAAAAATAGAAGGAAATCTGTGAAATCTAAAAGTAAAGAAATCCCTTCAGCCCCCCCTGGTTTTAGATCCCTTACTTCTTTCATGCTAAAAAAGGTTGCAAAGACTGATAAATCTGAATGTGATCCAATCTGCATGGAGAGTATATTGAAGCTAAATGATGCTGCTGCATATAGGGCAATTCTTAAGCATCGTCCATGGATACTTTTCGATCATAGCAACTGTGACCCTGAGAAATCCAACACAGAGGATTTCCCTCAGGGTTTTTCTTCAAACGCTTGTCGTCCAAAAGGGGTTTCTCTTGGTTGTCCAGATTGTAATGATTGTCTGAAGGTAACTGCAAGGTGGTGCCCTGAGGATGCAAGAAGAGATGTCCTTGATGAAGTTCAAATGTTCCACCCAACAGAAGAGGAATTTAAAGACACACTTGAATATATTGCAAGCATACGTTCCAAAGCAGAGCCTTACGGAATCTGTCGTATTGTTCCTCCTCCTTCTTGGCAACCACCATGTCTTCCTGATGAAAAAAACATATGGGAAAACTCTAAATTTTCTACTAAGATTCAGCGGATTGATGGCCTCCAAGTTCAGTGCCAGCAAGAAGTTATTGACAACCCTTACAAAAATGTAGAGACCAAGACCAGAAAAGAGCCGGGAGCAGCTTTGGACTCTCAACCTGGTAATGAAAACCCCCATGATGTTAAAGACTTAGAGTCTAAACCTGGCCCTACCTTCAGTCTCAGTACATTTAAGAAATTTGCTGATGATTTCAAGGCCAAGTACTTCCACCGTGACAATAATGTCATGGGTTCTGATGAAAAGTGGGAGCCATCTGTGGAAAATGTTGAGGGAGAGTATGGACGAATTACTCAAAATCCAACTGATGAAATTGAGGTGGTTTTTGGTAATGACTTGGGGACTGGAGTTTTAAGCAGTGGATTTCCAATGGTGTCTGATTCTGTGGAGTCGTTAAATCATCCTGAATGTATGAGATCTGGATGGAATTTAAATAATATGCTTACACAAGCTGGTTCTCTCCTTTCATTTGAAAGCTCCGAGGTTTCTAGCAAATTTGCCCCTCAGGTTCACGTTGGAATGTGCTTTTCTTCATTCAATTGGAAAGTGGAAGAGCACCAGTTGTACTCGTTGTGTTACATGCATGTGGGAGAGCCTAGAGTTTGGTATAGCATTCCGGGAAGATTTGCTGCTGACTTTGAAACAGTGAGGAAGAAGCATCTCCCAATTTTGTTTGCAGAAGAGTCTGATTTGCTTGACAATTTGCAGATGCAGTTATCCTCCGCCATATTGAAGTCAGAGGGTGTACCAGTATATCGCTGTGTCCAGTATCCCCGGGAGTTTGTTCTTGTCTTCCCAGGAGCATACCATTCCGGATTTGATTGTGGTTTCAATTTTTCTGAATCAGTCAGTTTTGCTCCTCTTGATTGGCTGCTTCATGGACAGAAAGTTGTAGAGTTATATTGTGAACAAAGGCGAAGGACATCAATTTCATACGATAAGCTGTTGCTTGGGGCAGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGGACTCTGCGGGATGGGTACCCCAGATAATTTATACTGGAAAGATGCATGTGGAAGGGATGGGATATTAACAAAAGCTTTTGATTTACGGAGAAAGAGTGAAAGTTCAAAGAGGGAATTTCTTTGCGCTTCTCTGAAGTCACGGATAATGGAAAAAGATTTCGATGTCACTTGCAAAAGAGAATGTTGTGTATGTCTCCGTGACTTGCACTTATCTGCCATAAGTTGTCCATGTTCGACCAACAAATTTGCATGTCTTAATCATGGAAAGCAGCTGTGTTTTTGCCCTTGGAGTGACAAATTTATCCTCTGGCGATATGAAATCAGTGAGTTGAATACCCTTTGTCTTGCTTTGGAGGGAAAAGCAAGTGTTATCCACAAATGGGCTAAAGTCGATCTTGGATTAACTGTGCACTCTGTCGCCTCCAAAGCATCGAAACAGAACCCAGGAAATGCAAGTGCTTCATCGTCTACTGCCTTAGCAAGAGTGGCATTTTTGAATTCACTGAAACGGAAAAGAGATGCAGTCGAGCCCAAAGGTTCGGGCACTGATGGTATCTCTCCTAGCATTGAGGCAAAATTGAAGCCACCGTTACCTGACTCAACATGTGTAGGTAAATCGAAGGCAAAACAGAAAAAGGTGGGTCACCAATCTACAGCAAGACACAAGAGTGGAGTCAATTCTGCTCCTGCCATTAAACCTGATCTCAAGTCGCGCAAGGTTCAGTCATCAATTCCAAACTTGGCTGAAAATGACCCAAAAGTGTCTAGGGATTTTCTAGGTCTTAGTTTAACGTCAGGTTATGTGTCACTTCTTCCGGAAATCAGGTCATTTGATGTTTCTTCAGATAGTTCAGCTTCATCATCAGGATCCGATGATGACACTTGA 2493 0.4196 MIFCLVFVAVIMESKNRRKSVKSKSKEIPSAPPGFRSLTSFMLKKVAKTDKSECDPICMESILKLNDAAAYRAILKHRPWILFDHSNCDPEKSNTEDFPQGFSSNACRPKGVSLGCPDCNDCLKVTARWCPEDARRDVLDEVQMFHPTEEEFKDTLEYIASIRSKAEPYGICRIVPPPSWQPPCLPDEKNIWENSKFSTKIQRIDGLQVQCQQEVIDNPYKNVETKTRKEPGAALDSQPGNENPHDVKDLESKPGPTFSLSTFKKFADDFKAKYFHRDNNVMGSDEKWEPSVENVEGEYGRITQNPTDEIEVVFGNDLGTGVLSSGFPMVSDSVESLNHPECMRSGWNLNNMLTQAGSLLSFESSEVSSKFAPQVHVGMCFSSFNWKVEEHQLYSLCYMHVGEPRVWYSIPGRFAADFETVRKKHLPILFAEESDLLDNLQMQLSSAILKSEGVPVYRCVQYPREFVLVFPGAYHSGFDCGFNFSESVSFAPLDWLLHGQKVVELYCEQRRRTSISYDKLLLGAARKAVRAQFEIGLCGMGTPDNLYWKDACGRDGILTKAFDLRRKSESSKREFLCASLKSRIMEKDFDVTCKRECCVCLRDLHLSAISCPCSTNKFACLNHGKQLCFCPWSDKFILWRYEISELNTLCLALEGKASVIHKWAKVDLGLTVHSVASKASKQNPGNASASSSTALARVAFLNSLKRKRDAVEPKGSGTDGISPSIEAKLKPPLPDSTCVGKSKAKQKKVGHQSTARHKSGVNSAPAIKPDLKSRKVQSSIPNLAENDPKVSRDFLGLSLTSGYVSLLPEIRSFDVSSDSSASSSGSDDDT 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2487 830 Gene3D Cupin 127 491 - -
Prci1g2487 830 Pfam JmjC domain, hydroxylase 374 490 IPR003347 -
Prci1g2487 830 PANTHER LYSINE-SPECIFIC DEMETHYLASE 137 749 - -
Prci1g2487 830 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Prci1g2487 830 SMART cupin_9 344 507 IPR003347 -
Prci1g2487 830 MobiDBLite consensus disorder prediction 709 788 - -
Prci1g2487 830 SUPERFAMILY Clavaminate synthase-like 306 529 - -
Prci1g2487 830 MobiDBLite consensus disorder prediction 220 254 - -
Prci1g2487 830 Pfam jmjN domain 145 176 IPR003349 -
Prci1g2487 830 SMART JmjN_1 141 182 IPR003349 -
Prci1g2487 830 ProSiteProfiles JmjC domain profile. 341 507 IPR003347 -
Prci1g2487 830 Pfam C5HC2 zinc finger 597 649 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2487 Prci-Chr1 45042841 45049499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2487 12 677 JUMONJI Transcription Factor Family AT1G08620 47.210 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci1g2487 JmjC 9e-33 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2487 K11446 - pcin:129315581 1646.71