Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2486 ATGATTTTTTGTTTGGTCTTTGTTGCAGTAATTATGGAATCAAAAAATAGAAGGAAATCTGTGAAATCTAAAAGTAAAGAAATCCCTTCAGCCCCCCCTGGTTTTAGATCCCTTACTTCTTTCATGCTAAAAAAGGTTGCAAAGACTGATAAATCTGAATGTGATCCAATCTGCATGGAGAGTATATTGAAGCTAAATGATGCTGCTGCATATAGGGCAATTCTTAAGCATCGTCCATGGATACTTTTCGATCATAGCAACTGTGACCCTGAGAAATCCAACACAGAGGATTTCCCTCAGGGTTTTTCTTCAAACGCTTGTCGTCCAAAAGGGGTTTCTCTTGGTTGTCCAGATTGTAATGATTGTCTGAAGGTAACTGCAAGGTGGTGCCCTGAGGATGCAAGAAGAGATGTCCTTGATGAAGTTCAAATGTTCCACCCAACAGAAGAGAGACCAAGACCAGAAAAGAGCCGGGAGCAGCTTTGGACTCTCAACCTGGCCAAGTACTTCCACCGTGACAATAATGTCATGGGTTCTGATGAAAAGTGGGAGCCATCTGTGGAAAATGTTGAGGGAGAGTATGGACGAATTACTCAAAATCCAACTGATGAAATTGAGGTGGTTTTTGGTAATGACTTGGGGACTGGAGTTTTAAGCAGTGGATTTCCAATGGTGTCTGATTCTGTGGAGTCGTTAAATCATCCTGAATGTATGAGATCTGGATGGAATTTAAATAATATGCTTACACAAGCTGGTTCTCTCCTTTCATTTGAAAGCTCCGAGGTTTCTAGCAAATTTGCCCCTCAGGTTCACGTTGGAATGTGCTTTTCTTCATTCAATTGGAAAGTGGAAGAGCACCAGTTGTACTCGTTGTGTTACATGCATGTGGGAGAGCCTAGAGTTTGGTATAGCATTCCGGGAAGATTTGCTGCTGACTTTGAAACAGTGAGGAAGAAGCATCTCCCAATTTTGTTTGCAGAAGAGTCTGATTTGCTTGACAATTTGCAGATGCAGTTATCCTCCGCCATATTGAAGTCAGAGGGTGTACCAGTATATCGCTGTGTCCAGTATCCCCGGGAGTTTGTTCTTGTCTTCCCAGGAGCATACCATTCCGGATTTGATTGTGGTTTCAATTTTTCTGAATCAGTCAGTTTTGCTCCTCTTGATTGGCTGCTTCATGGACAGAAAGTTGTAGAGTTATATTGTGAACAAAGGCGAAGGACATCAATTTCATACGATAAGCTGTTGCTTGGGGCAGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGGACTCTGCGGGATGGGTACCCCAGATAATTTATACTGGAAAGATGCATGTGGAAGGGATGGGATATTAACAAAAGCTTTTGATTTACGGAGAAAGAGTGAAAGTTCAAAGAGGGAATTTCTTTGCGCTTCTCTGAAGTCACGGATAATGGAAAAAGATTTCGATGTCACTTGCAAAAGAGAATGTTGTGTATGTCTCCGTGACTTGCACTTATCTGCCATAAGTTGTCCATGTTCGACCAACAAATTTGCATGTCTTAATCATGGAAAGCAGCTGTGTTTTTGCCCTTGGAGTGACAAATTTATCCTCTGGCGATATGAAATCAGTGAGTTGAATACCCTTTGTCTTGCTTTGGAGGGAAAAGCAAGTGTTATCCACAAATGGGCTAAAGTCGATCTTGGATTAACTGTGCACTCTGTCGCCTCCAAAGCATCGAAACAGAACCCAGGAAATGCAAGTGCTTCATCGTCTACTGCCTTAGCAAGAGTGGCATTTTTGAATTCACTGAAACGGAAAAGAGATGCAGTCGAGCCCAAAGGTTCGGGCACTGATGGTATCTCTCCTAGCATTGAGGCAAAATTGAAGCCACCGTTACCTGACTCAACATGTGTAGGTAAATCGAAGGCAAAACAGAAAAAGGTGGGTCACCAATCTACAGCAAGACACAAGAGTGGAGTCAATTCTGCTCCTGCCATTAAACCTGATCTCAAGTCGCGCAAGGTTCAGTCATCAATTCCAAACTTGGCTGAAAATGACCCAAAAGTGTCTAGGGATTTTCTAGGTCTTAGTTTAACGTCAGGTTATGTGTCACTTCTTCCGGAAATCAGGTCATTTGATGTTTCTTCAGATAGTTCAGCTTCATCATCAGGATCCGATGATGACACTTGA 2178 0.4238 MIFCLVFVAVIMESKNRRKSVKSKSKEIPSAPPGFRSLTSFMLKKVAKTDKSECDPICMESILKLNDAAAYRAILKHRPWILFDHSNCDPEKSNTEDFPQGFSSNACRPKGVSLGCPDCNDCLKVTARWCPEDARRDVLDEVQMFHPTEERPRPEKSREQLWTLNLAKYFHRDNNVMGSDEKWEPSVENVEGEYGRITQNPTDEIEVVFGNDLGTGVLSSGFPMVSDSVESLNHPECMRSGWNLNNMLTQAGSLLSFESSEVSSKFAPQVHVGMCFSSFNWKVEEHQLYSLCYMHVGEPRVWYSIPGRFAADFETVRKKHLPILFAEESDLLDNLQMQLSSAILKSEGVPVYRCVQYPREFVLVFPGAYHSGFDCGFNFSESVSFAPLDWLLHGQKVVELYCEQRRRTSISYDKLLLGAARKAVRAQFEIGLCGMGTPDNLYWKDACGRDGILTKAFDLRRKSESSKREFLCASLKSRIMEKDFDVTCKRECCVCLRDLHLSAISCPCSTNKFACLNHGKQLCFCPWSDKFILWRYEISELNTLCLALEGKASVIHKWAKVDLGLTVHSVASKASKQNPGNASASSSTALARVAFLNSLKRKRDAVEPKGSGTDGISPSIEAKLKPPLPDSTCVGKSKAKQKKVGHQSTARHKSGVNSAPAIKPDLKSRKVQSSIPNLAENDPKVSRDFLGLSLTSGYVSLLPEIRSFDVSSDSSASSSGSDDDT 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2486 725 MobiDBLite consensus disorder prediction 604 683 - -
Prci1g2486 725 Gene3D Cupin 125 408 - -
Prci1g2486 725 SMART cupin_9 239 402 IPR003347 -
Prci1g2486 725 SUPERFAMILY Clavaminate synthase-like 230 424 - -
Prci1g2486 725 Pfam C5HC2 zinc finger 492 544 IPR004198 -
Prci1g2486 725 ProSiteProfiles JmjC domain profile. 236 402 IPR003347 -
Prci1g2486 725 Pfam JmjC domain, hydroxylase 269 385 IPR003347 -
Prci1g2486 725 PANTHER LYSINE-SPECIFIC DEMETHYLASE 166 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2486 Prci-Chr1 45042841 45049499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2486 167 572 JUMONJI Transcription Factor Family AT1G08620 51.208 2.63e-138 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci1g2486 JmjC 7.4e-33 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2486 K11446 - pcin:129315581 1097.42