Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2480 ATGTTTGAAGAAATTTCCCTTACAAGTCGAATAGATACAGCTTCAGTAAAATGTCTTGTCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAATGGTGAAACCAATGCCATTTCAGAAGAACTACAATCATATGATTGGCGTGTTAAAGCGTTTGAAACCAGTGCTCGATGATGTTATACATTGCAAAACTTACTTAGATGAAAATCTATGTAAAGAGTGCGAAGAATTGGATATGGCAGTTAATGGAGCTCGAGAGTTATTGGAAAATTGGAGCCCAAAGAGAAGCAAGATTCTTAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATATCCTCAGTTGAGATTTGTCACTTGATATTTAGATCCCTACAGTCACCTCCGCCTACTTCAGTTTTGGCTAGTCTCGAGAACTATTTGCAGGAGCTTAAATGTTTGAAGAAGGAACCAGCCACAGGCTACATAGAAGAGGCGTTGACAAATCAAAGAGAAAATATTGAACTTCACAACGAAAATCTAAAGAAAATCATTGAGTTGCTTGGATTGACGGCAAACCTGGAACTTATGAAAGAAAGTATTGCTGTGGAAAAGGAAAGACTGAGTACTGAAGTCAAGAAAGTGAAAGCAGAATTAGATGAAATTAATGCAATTGTGGGTCTTGTCTGCAGCTTACGTGATTATGCAATTAAATTTGAGCGCCCTGAAGGCAAAAGTGGCATCTCAATTCCTTCATACTTTATATGTCCTTTGTCATTGGAACTTATGGTGGATCCTGTTATTGTGGCTTCTGGTCAGACATATGATAGGGTATCCATCCAAAAATGGCTTGATCATGGGTTGAATGTTTGTCCCAAGACTCATCAGAGACTTGCTCATACAAACCTCATTCCTAATTATACTGTGAAGGCCATGGTAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTACCAATAACTCTGAGTTCAATAATATGAAAACCCCCATAGACCATTCATTGCCCCAAGATTTAGCTCGTTCATGTAGTTTTGGGTCTGTACATAGTAGTAATTCCACATCAAGATCATCTCTTCAAACTGGAAATGCATTTGAAAAGCAAAAAGGTGATATCTCTTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGCTTAGAAATAGAAAAATTTGAGCAACAATCTCCTGCTCCTTCCTATATTTATAGTAGAAGTGAATCATTCTCAAGTTCCATTTCTAGTACTGACTGTGCACACCCTGTTTCAAAAGAAGCATCAGAGATAGTTAGTAAGCAAGAAAATGTAAAGGAGCTGTCCGGAGAAATCACCAAGGGATCTACAGCTCCTGCAAATAACGAATCAGAGTCTTCTCCTTGGTTATCAGGAAAGCAATTTCAAGGCCCAAGATCAAAATTAGGAGAAACAGAGACTAGAAATGATAATAATAACCGCCATTCAAAAGTTCATTCTCTTCCTGTTTGCAATTCAGGATATGATGAGTTGACAACTGCATCTTATGTCAATAAGTTGATTGAAGATCTTCACAGTCCATGCGATGAAGCGCAAACTAAGGCTGCAGAAGAATTGAGGCTTCTTTCGAAGCACAATGTGGAAAACCGAATCATGATAGGGCAGTGTGGGGCTATCGCACCTTTACTTTCACTTCTTTATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCCTTGCTGAATTTGTCGATTAGTGAAGATAACAAGGCCTTGATTGTGGAAGCTGGAGCAATCGAACCACTTATCCATGTTCTGAAAACTGGAAATGATGGGGCCAAGGAGAATTCTGCAGCAGCTCTATTTAGCCTTTCTGTAATAGAACACTATAAGGCAACAATTGGCCAGTCTGGTGCGGTCAAATCTTTGGTTGATCTCCTTGGCTCAGGAACTCTTAGAGGACAGAAGGATGCTGCTACTGCTTTATTTAACCTATCAATATGTCATGAGAATAAAGCTCGTATTGTTCAAGCTGGAGCCGTGAAGCATCTGGTTCAGTTGATGGACCATTCTGCTGGAATGGTTGATAAAGCTGTTGCTCTTTTGGCAAATCTGTCAACAATTGCAGAGGGGCGATTAGCAATTGCAAGGGAGGGGGCCATCCCCTTGCTAGTTGAGTTTGTTGATTCAGGTTCCCAAAGGGGAAAGGAAAATGCTGCATCCATTCTCTTACAACTATGCCTTCATAATACCAAGTTTTGTACTCTGGTTCTGCAAGAAGGAGCTGTACCTCCCTTGGTTGCATTATCTCAATCCGGTACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTAAGCCATTTTCGTTATCAACGGGAAGGAGCTACTGGGAAGGGAAAAGCTTGA 2385 0.4021 MFEEISLTSRIDTASVKCLVNSISRFIHLVSCQMVKPMPFQKNYNHMIGVLKRLKPVLDDVIHCKTYLDENLCKECEELDMAVNGARELLENWSPKRSKILSVLRSGSLLMKIQISSVEICHLIFRSLQSPPPTSVLASLENYLQELKCLKKEPATGYIEEALTNQRENIELHNENLKKIIELLGLTANLELMKESIAVEKERLSTEVKKVKAELDEINAIVGLVCSLRDYAIKFERPEGKSGISIPSYFICPLSLELMVDPVIVASGQTYDRVSIQKWLDHGLNVCPKTHQRLAHTNLIPNYTVKAMVANWCEENNVKLTNNSEFNNMKTPIDHSLPQDLARSCSFGSVHSSNSTSRSSLQTGNAFEKQKGDISSRLSGESNGCQSLEIEKFEQQSPAPSYIYSRSESFSSSISSTDCAHPVSKEASEIVSKQENVKELSGEITKGSTAPANNESESSPWLSGKQFQGPRSKLGETETRNDNNNRHSKVHSLPVCNSGYDELTTASYVNKLIEDLHSPCDEAQTKAAEELRLLSKHNVENRIMIGQCGAIAPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIVEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIEHYKATIGQSGAVKSLVDLLGSGTLRGQKDAATALFNLSICHENKARIVQAGAVKHLVQLMDHSAGMVDKAVALLANLSTIAEGRLAIAREGAIPLLVEFVDSGSQRGKENAASILLQLCLHNTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRYQREGATGKGKA 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2480 794 SUPERFAMILY RING/U-box 241 320 - -
Prci1g2480 794 CDD RING-Ubox_PUB 247 299 IPR045210 -
Prci1g2480 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 591 IPR000225 GO:0005515
Prci1g2480 794 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
Prci1g2480 794 Pfam U-box domain 246 317 IPR003613 GO:0004842|GO:0016567
Prci1g2480 794 FunFam RING-type E3 ubiquitin transferase 492 787 - -
Prci1g2480 794 Gene3D - 648 789 IPR011989 -
Prci1g2480 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 713 IPR000225 GO:0005515
Prci1g2480 794 SMART arm_5 661 700 IPR000225 GO:0005515
Prci1g2480 794 SMART arm_5 701 741 IPR000225 GO:0005515
Prci1g2480 794 SMART arm_5 620 660 IPR000225 GO:0005515
Prci1g2480 794 SMART arm_5 743 783 IPR000225 GO:0005515
Prci1g2480 794 SMART arm_5 538 578 IPR000225 GO:0005515
Prci1g2480 794 SMART arm_5 579 619 IPR000225 GO:0005515
Prci1g2480 794 Coils Coil 194 221 - -
Prci1g2480 794 SUPERFAMILY ARM repeat 500 781 IPR016024 -
Prci1g2480 794 Coils Coil 160 183 - -
Prci1g2480 794 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Prci1g2480 794 PANTHER U BOX DOMAIN-CONTAINING 39 781 - -
Prci1g2480 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 321 IPR013083 -
Prci1g2480 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Prci1g2480 794 Pfam Armadillo/beta-catenin-like repeat 622 659 IPR000225 GO:0005515
Prci1g2480 794 Pfam Armadillo/beta-catenin-like repeat 579 618 IPR000225 GO:0005515
Prci1g2480 794 Pfam Armadillo/beta-catenin-like repeat 538 577 IPR000225 GO:0005515
Prci1g2480 794 FunFam RING-type E3 ubiquitin transferase 241 319 - -
Prci1g2480 794 Gene3D - 480 644 IPR011989 -
Prci1g2480 794 MobiDBLite consensus disorder prediction 352 382 - -
Prci1g2480 794 MobiDBLite consensus disorder prediction 441 474 - -
Prci1g2480 794 MobiDBLite consensus disorder prediction 425 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2480 Prci-Chr1 44983086 44987770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2480 11 794 U-box Gene Family AT3G54790 52.771 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2480 - - gmx:100800949 1056.97