Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2479 ATGCATATTGCTGCAAGTCGAATAGATACAGCTTCAGTAAAATGTCTTGTCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAATGGTGAAACCAATGCCATTTCAGAAGAACTACAATCATATGATTGGCGTGTTAAAGCGTTTGAAACCAGTGCTCGATGATGTTATACATTGCAAAACTTACTTAGATGAAAATCTATGTAAAGAGTGCGAAGAATTGGATATGGCAGTTAATGGAGCTCGAGAGTTATTGGAAAATTGGAGCCCAAAGAGAAGCAAGATTCTTAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATATCCTCAGTTGAGATTTGTCACTTGATATTTAGATCCCTACAGTCACCTCCGCCTACTTCAGTTTTGGCTAGTCTCGAGAACTATTTGCAGGAGCTTAAATGTTTGAAGAAGGAACCAGCCACAGGCTACATAGAAGAGGCGTTGACAAATCAAAGAGAAAATATTGAACTTCACAACGAAAATCTAAAGAAAATCATTGAGTTGCTTGGATTGACGGCAAACCTGGAACTTATGAAAGAAAGTATTGCTGTGGAAAAGGAAAGACTGAGTACTGAAGTCAAGAAAGTGAAAGCAGAATTAGATGAAATTAATGCAATTGTGGGTCTTGTCTGCAGCTTACGTGATTATGCAATTAAATTTGAGCGCCCTGAAGGCAAAAGTGGCATCTCAATTCCTTCATACTTTATATGTCCTTTGTCATTGGAACTTATGGTGGATCCTGTTATTGTGGCTTCTGGTCAGACATATGATAGGGTATCCATCCAAAAATGGCTTGATCATGGGTTGAATGTTTGTCCCAAGACTCATCAGAGACTTGCTCATACAAACCTCATTCCTAATTATACTGTGAAGGCCATGGTAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTACCAATAACTCTGAGTTCAATAATATGAAAACCCCCATAGACCATTCATTGCCCCAAGATTTAGCTCGTTCATGTAGTTTTGGGTCTGTACATAGTAGTAATTCCACATCAAGATCATCTCTTCAAACTGGAAATGCATTTGAAAAGCAAAAAGGTGATATCTCTTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGCTTAGAAATAGAAAAATTTGAGCAACAATCTCCTGCTCCTTCCTATATTTATAGTAGAAGTGAATCATTCTCAAGTTCCATTTCTAGTACTGACTGTGCACACCCTGTTTCAAAAGAAGCATCAGAGATAGTTAGTAAGCAAGAAAATGTAAAGGAGCTGTCCGGAGAAATCACCAAGGGATCTACAGCTCCTGCAAATAACGAATCAGAGTCTTCTCCTTGGTTATCAGGAAAGCAATTTCAAGGCCCAAGATCAAAATTAGGAGAAACAGAGACTAGAAATGATAATAATAACCGCCATTCAAAAGTTCATTCTCTTCCTGTTTGCAATTCAGGATATGATGAGTTGACAACTGCATCTTATGTCAATAAGTTGATTGAAGATCTTCACAGTCCATGCGATGAAGCGCAAACTAAGGCTGCAGAAGAATTGAGGCTTCTTTCGAAGCACAATGTGGAAAACCGAATCATGATAGGGCAGTGTGGGGCTATCGCACCTTTACTTTCACTTCTTTATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCCTTGCTGAATTTGTCGATTAGTGAAGATAACAAGGCCTTGATTGTGGAAGCTGGAGCAATCGAACCACTTATCCATGTTCTGAAAACTGGAAATGATGGGGCCAAGGAGAATTCTGCAGCAGCTCTATTTAGCCTTTCTGTAATAGAACACTATAAGGCAACAATTGGCCAGTCTGGTGCGGTCAAATCTTTGGTTGATCTCCTTGGCTCAGGAACTCTTAGAGGACAGAAGGATGCTGCTACTGCTTTATTTAACCTATCAATATGTCATGAGAATAAAGCTCGTATTGTTCAAGCTGGAGCCGTGAAGCATCTGGTTCAGTTGATGGACCATTCTGCTGGAATGGTTGATAAAGCTGTTGCTCTTTTGGCAAATCTGTCAACAATTGCAGAGGGGCGATTAGCAATTGCAAGGGAGGGGGCCATCCCCTTGCTAGTTGAGTTTGTTGATTCAGGTTCCCAAAGGGGAAAGGAAAATGCTGCATCCATTCTCTTACAACTATGCCTTCATAATACCAAGTTTTGTACTCTGGTTCTGCAAGAAGGAGCTGTACCTCCCTTGGTTGCATTATCTCAATCCGGTACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTAAGCCATTTTCGTTATCAACGGGAAGGAGCTACTGGGAAGGGAAAAGCTTGA 2376 0.4032 MHIAASRIDTASVKCLVNSISRFIHLVSCQMVKPMPFQKNYNHMIGVLKRLKPVLDDVIHCKTYLDENLCKECEELDMAVNGARELLENWSPKRSKILSVLRSGSLLMKIQISSVEICHLIFRSLQSPPPTSVLASLENYLQELKCLKKEPATGYIEEALTNQRENIELHNENLKKIIELLGLTANLELMKESIAVEKERLSTEVKKVKAELDEINAIVGLVCSLRDYAIKFERPEGKSGISIPSYFICPLSLELMVDPVIVASGQTYDRVSIQKWLDHGLNVCPKTHQRLAHTNLIPNYTVKAMVANWCEENNVKLTNNSEFNNMKTPIDHSLPQDLARSCSFGSVHSSNSTSRSSLQTGNAFEKQKGDISSRLSGESNGCQSLEIEKFEQQSPAPSYIYSRSESFSSSISSTDCAHPVSKEASEIVSKQENVKELSGEITKGSTAPANNESESSPWLSGKQFQGPRSKLGETETRNDNNNRHSKVHSLPVCNSGYDELTTASYVNKLIEDLHSPCDEAQTKAAEELRLLSKHNVENRIMIGQCGAIAPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIVEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIEHYKATIGQSGAVKSLVDLLGSGTLRGQKDAATALFNLSICHENKARIVQAGAVKHLVQLMDHSAGMVDKAVALLANLSTIAEGRLAIAREGAIPLLVEFVDSGSQRGKENAASILLQLCLHNTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRYQREGATGKGKA 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2479 791 ProSiteProfiles U-box domain profile. 242 316 IPR003613 GO:0004842|GO:0016567
Prci1g2479 791 Gene3D - 645 786 IPR011989 -
Prci1g2479 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 588 IPR000225 GO:0005515
Prci1g2479 791 PANTHER U BOX DOMAIN-CONTAINING 36 778 - -
Prci1g2479 791 MobiDBLite consensus disorder prediction 349 379 - -
Prci1g2479 791 MobiDBLite consensus disorder prediction 438 471 - -
Prci1g2479 791 SMART Ubox_2 246 309 IPR003613 GO:0004842|GO:0016567
Prci1g2479 791 MobiDBLite consensus disorder prediction 422 487 - -
Prci1g2479 791 CDD RING-Ubox_PUB 244 296 IPR045210 -
Prci1g2479 791 FunFam RING-type E3 ubiquitin transferase 489 784 - -
Prci1g2479 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 669 710 IPR000225 GO:0005515
Prci1g2479 791 SUPERFAMILY ARM repeat 497 778 IPR016024 -
Prci1g2479 791 Coils Coil 191 218 - -
Prci1g2479 791 Pfam Armadillo/beta-catenin-like repeat 576 615 IPR000225 GO:0005515
Prci1g2479 791 Pfam Armadillo/beta-catenin-like repeat 619 656 IPR000225 GO:0005515
Prci1g2479 791 Pfam Armadillo/beta-catenin-like repeat 535 574 IPR000225 GO:0005515
Prci1g2479 791 SUPERFAMILY RING/U-box 238 317 - -
Prci1g2479 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 628 670 IPR000225 GO:0005515
Prci1g2479 791 Coils Coil 157 180 - -
Prci1g2479 791 SMART arm_5 576 616 IPR000225 GO:0005515
Prci1g2479 791 SMART arm_5 740 780 IPR000225 GO:0005515
Prci1g2479 791 SMART arm_5 617 657 IPR000225 GO:0005515
Prci1g2479 791 SMART arm_5 698 738 IPR000225 GO:0005515
Prci1g2479 791 SMART arm_5 658 697 IPR000225 GO:0005515
Prci1g2479 791 SMART arm_5 535 575 IPR000225 GO:0005515
Prci1g2479 791 Pfam U-box domain 243 314 IPR003613 GO:0004842|GO:0016567
Prci1g2479 791 Gene3D - 477 641 IPR011989 -
Prci1g2479 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 318 IPR013083 -
Prci1g2479 791 FunFam RING-type E3 ubiquitin transferase 238 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2479 Prci-Chr1 44982725 44987770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2479 8 791 U-box Gene Family AT3G54790 52.771 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2479 - - gmx:100800949 1057.74