Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2477 ATGGTGAAACCAATGCCATTTCAGAAGAACTACAATCATATGATTGGCGTGTTAAAGCGTTTGAAACCAGTGCTCGATGATGTTATACATTGCAAAACTTACTTAGATGAAAATCTATGTAAAGAGTGCGAAGAATTGGATATGGCAGTTAATGGAGCTCGAGAGTTATTGGAAAATTGGAGCCCAAAGAGAAGCAAGATTCTTAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATATCCTCAGTTGAGATTTGTCACTTGATATTTAGATCCCTACAGTCACCTCCGCCTACTTCAGTTTTGGCTAGTCTCGAGAACTATTTGCAGGAGCTTAAATGTTTGAAGAAGGAACCAGCCACAGGCTACATAGAAGAGGCGTTGACAAATCAAAGAGAAAATATTGAACTTCACAACGAAAATCTAAAGAAAATCATTGAGTTGCTTGGATTGACGGCAAACCTGGAACTTATGAAAGAAAGTATTGCTGTGGAAAAGGAAAGACTGAGTACTGAAGTCAAGAAAGTGAAAGCAGAATTAGATGAAATTAATGCAATTGTGGGTCTTGTCTGCAGCTTACGTGATTATGCAATTAAATTTGAGCGCCCTGAAGGCAAAAGTGGCATCTCAATTCCTTCATACTTTATATGTCCTTTGTCATTGGAACTTATGGTGGATCCTGTTATTGTGGCTTCTGGTCAGACATATGATAGGGTATCCATCCAAAAATGGCTTGATCATGGGTTGAATGTTTGTCCCAAGACTCATCAGAGACTTGCTCATACAAACCTCATTCCTAATTATACTGTGAAGGCCATGGTAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTACCAATAACTCTGAGTTCAATAATATGAAAACCCCCATAGACCATTCATTGCCCCAAGATTTAGCTCGTTCATGTAGTTTTGGGTCTGTACATAGTAGTAATTCCACATCAAGATCATCTCTTCAAACTGGAAATGCATTTGAAAAGCAAAAAGGTGATATCTCTTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGCTTAGAAATAGAAAAATTTGAGCAACAATCTCCTGCTCCTTCCTATATTTATAGTAGAAGTGAATCATTCTCAAGTTCCATTTCTAGTACTGACTGTGCACACCCTGTTTCAAAAGAAGCATCAGAGATAGTTAGTAAGCAAGAAAATGTAAAGGAGCTGTCCGGAGAAATCACCAAGGGATCTACAGCTCCTGCAAATAACGAATCAGAGTCTTCTCCTTGGTTATCAGGAAAGCAATTTCAAGGCCCAAGATCAAAATTAGGAGAAACAGAGACTAGAAATGATAATAATAACCGCCATTCAAAAGTTCATTCTCTTCCTGTTTGCAATTCAGGATATGATGAGTTGACAACTGCATCTTATGTCAATAAGTTGATTGAAGATCTTCACAGTCCATGCGATGAAGCGCAAACTAAGGCTGCAGAAGAATTGAGGCTTCTTTCGAAGCACAATGTGGAAAACCGAATCATGATAGGGCAGTGTGGGGCTATCGCACCTTTACTTTCACTTCTTTATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCCTTGCTGAATTTGTCGATTAGTGAAGATAACAAGGCCTTGATTGTGGAAGCTGGAGCAATCGAACCACTTATCCATGTTCTGAAAACTGGAAATGATGGGGCCAAGGAGAATTCTGCAGCAGCTCTATTTAGCCTTTCTGTAATAGAACACTATAAGGCAACAATTGGCCAGTCTGGTGCGGTCAAATCTTTGGTTGATCTCCTTGGCTCAGGAACTCTTAGAGGACAGAAGGATGCTGCTACTGCTTTATTTAACCTATCAATATGTCATGAGAATAAAGCTCGTATTGTTCAAGCTGGAGCCGTGAAGCATCTGGTTCAGTTGATGGACCATTCTGCTGGAATGGTTGATAAAGCTGTTGCTCTTTTGGCAAATCTGTCAACAATTGCAGAGGGGCGATTAGCAATTGCAAGGGAGGGGGCCATCCCCTTGCTAGTTGAGTTTGTTGATTCAGGTTCCCAAAGGGGAAAGGAAAATGCTGCATCCATTCTCTTACAACTATGCCTTCATAATACCAAGTTTTGTACTCTGGTTCTGCAAGAAGGAGCTGTACCTCCCTTGGTTGCATTATCTCAATCCGGTACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTAAGCCATTTTCGTTATCAACGGGAAGGAGCTACTGGGAAGGGAAAAGCTTGA 2286 0.4042 MVKPMPFQKNYNHMIGVLKRLKPVLDDVIHCKTYLDENLCKECEELDMAVNGARELLENWSPKRSKILSVLRSGSLLMKIQISSVEICHLIFRSLQSPPPTSVLASLENYLQELKCLKKEPATGYIEEALTNQRENIELHNENLKKIIELLGLTANLELMKESIAVEKERLSTEVKKVKAELDEINAIVGLVCSLRDYAIKFERPEGKSGISIPSYFICPLSLELMVDPVIVASGQTYDRVSIQKWLDHGLNVCPKTHQRLAHTNLIPNYTVKAMVANWCEENNVKLTNNSEFNNMKTPIDHSLPQDLARSCSFGSVHSSNSTSRSSLQTGNAFEKQKGDISSRLSGESNGCQSLEIEKFEQQSPAPSYIYSRSESFSSSISSTDCAHPVSKEASEIVSKQENVKELSGEITKGSTAPANNESESSPWLSGKQFQGPRSKLGETETRNDNNNRHSKVHSLPVCNSGYDELTTASYVNKLIEDLHSPCDEAQTKAAEELRLLSKHNVENRIMIGQCGAIAPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIVEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIEHYKATIGQSGAVKSLVDLLGSGTLRGQKDAATALFNLSICHENKARIVQAGAVKHLVQLMDHSAGMVDKAVALLANLSTIAEGRLAIAREGAIPLLVEFVDSGSQRGKENAASILLQLCLHNTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRYQREGATGKGKA 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2477 761 Coils Coil 161 188 - -
Prci1g2477 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 598 640 IPR000225 GO:0005515
Prci1g2477 761 Gene3D - 615 756 IPR011989 -
Prci1g2477 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 288 IPR013083 -
Prci1g2477 761 SMART Ubox_2 216 279 IPR003613 GO:0004842|GO:0016567
Prci1g2477 761 Pfam Armadillo/beta-catenin-like repeat 505 544 IPR000225 GO:0005515
Prci1g2477 761 Pfam Armadillo/beta-catenin-like repeat 589 626 IPR000225 GO:0005515
Prci1g2477 761 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515
Prci1g2477 761 Gene3D - 447 611 IPR011989 -
Prci1g2477 761 FunFam RING-type E3 ubiquitin transferase 208 286 - -
Prci1g2477 761 PANTHER U BOX DOMAIN-CONTAINING 6 748 - -
Prci1g2477 761 MobiDBLite consensus disorder prediction 319 349 - -
Prci1g2477 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Prci1g2477 761 SUPERFAMILY ARM repeat 467 748 IPR016024 -
Prci1g2477 761 MobiDBLite consensus disorder prediction 392 457 - -
Prci1g2477 761 MobiDBLite consensus disorder prediction 408 441 - -
Prci1g2477 761 CDD RING-Ubox_PUB 214 266 IPR045210 -
Prci1g2477 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 639 680 IPR000225 GO:0005515
Prci1g2477 761 SMART arm_5 628 667 IPR000225 GO:0005515
Prci1g2477 761 SMART arm_5 668 708 IPR000225 GO:0005515
Prci1g2477 761 SMART arm_5 587 627 IPR000225 GO:0005515
Prci1g2477 761 SMART arm_5 710 750 IPR000225 GO:0005515
Prci1g2477 761 SMART arm_5 505 545 IPR000225 GO:0005515
Prci1g2477 761 SMART arm_5 546 586 IPR000225 GO:0005515
Prci1g2477 761 FunFam RING-type E3 ubiquitin transferase 459 754 - -
Prci1g2477 761 Coils Coil 127 150 - -
Prci1g2477 761 Pfam U-box domain 213 284 IPR003613 GO:0004842|GO:0016567
Prci1g2477 761 ProSiteProfiles U-box domain profile. 212 286 IPR003613 GO:0004842|GO:0016567
Prci1g2477 761 SUPERFAMILY RING/U-box 208 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2477 Prci-Chr1 44982586 44987770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2477 6 761 U-box Gene Family AT3G54790 52.872 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2477 - - gmx:100800949 1016.14