Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2465 ATGGGAAGAGCTCCTTGCTGCCAGAAAGTGGGGTTGAAGAAAGGTCCTTGGACTCCAGAAGAAGATCAGATACTGATCAATCATGTCAACAAATATGGCCACAGCAATTGGCGTGCTCTCCCCAAATTAGCTGGGCTTCTAAGGTGCGGAAAAAGTTGCAGACTCCGATGGATAAATTATTTGAAGCCAGACATCAAACGAGGAAAGTTCACCCCAGAAGAAGAGGACACCATAATCAAGCTTCATGAAATGCTGGGAAACAGATGGTCAGCAATAGCAGCCAAGTTACCGGGCCGCACAGACAACGAAATAAAGAATGTGTGGCACACGCACTTGAAGAAGAGGCTTCCACAGAACCAACAGAACCATCTCCAAACAAAACGAAAACCAAAACAGAAGGAACAACACATCGTGACGGAGAACGTTAACAGACCACTTTCTCCACAGAGTTCAAGCGATGCGTCCACCCTCACCACAAACAACGATAACAGTATGGCGACTAGCAGTCCTCCTGCTAGTAATAATGTCACTAACGACGACGACATGTCCGTAAATATTAACGTTGAGTCTCTTGCACCGGAGGCCCTGGCATTGGACGATGATTTCTGGTCGGAAGTACTGTCGGCTGATAATTCCGAGGAGACTACCGATTATATTCCGGCCGCATGTGGCAGGGTGGAGTCTCAGTCTCAGTTTCTGTTCTCTCAGCTAGACGAGGTGCGAGTGGAAGCAGATCATGTTAGTTCGTCGAGCATGAGCGATGACATGGATTTTTGGTTTGATGTTTACACTAGAGCGGAGGAATTCACGGAGCTACCACAGTTGTGA 828 0.4746 MGRAPCCQKVGLKKGPWTPEEDQILINHVNKYGHSNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGKFTPEEEDTIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLPQNQQNHLQTKRKPKQKEQHIVTENVNRPLSPXQSSSDASTLTTNNDNSMATSSPPASNNVTNDDDMSVNINVESLAPEEXLALDDDFWSEVLSADNSEETTDYIPAACGRVESQSQFLFSQLDEVRVEADHVSSSSMSDDMDFWFDVYTRAEEFTELPQL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2465 277 CDD SANT 69 112 IPR001005 -
Prci1g2465 277 FunFam MYB-related transcription factor 13 66 - -
Prci1g2465 277 CDD SANT 16 61 IPR001005 -
Prci1g2465 277 Gene3D - 11 67 - -
Prci1g2465 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci1g2465 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci1g2465 277 FunFam Transcription factor MYB15 68 141 - -
Prci1g2465 277 MobiDBLite consensus disorder prediction 139 186 - -
Prci1g2465 277 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci1g2465 277 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci1g2465 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Prci1g2465 277 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci1g2465 277 Gene3D - 69 142 - -
Prci1g2465 277 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci1g2465 277 MobiDBLite consensus disorder prediction 114 188 - -
Prci1g2465 277 SMART sant 13 63 IPR001005 -
Prci1g2465 277 SMART sant 66 114 IPR001005 -
Prci1g2465 277 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2465 Prci-Chr1 44851548 44853451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2465 1 277 MYB Transcription Factor Family AT2G31180 50.699 1.63e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g2465 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2465 K09422 - gmx:100775603 325.479