Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2461 ATGGATTCAGATTCCTGCTTCTTCGATTACCATTACCCACAACCTGATGAGTTCTCCACCGTAAATTCCTGCGTTTCCGGAGTACAATTCTCCTGCTGGGATGACTTGTTGCTCTTCAACGATTACTCCCTCCCCTTCCACCACCACTCACCCGATTATTTCCTGTCTTCCGATGCTGTAGCCAAGGACTCCTCCTCCTCCTCCGACTCCAACCCCTCCTCCTCTCCCGGAGCACTCTTGGAATCAGTGCACGAAGTCTCCTCCACTGTTCAAGTCAAAGAAGAAAAAACTGAAGGCGCATCGCCTGCGCCGCCAGCTGATCCGAAGAGGGTGTACCGAGGAGTGAGGAGGCGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCCACGAGGAAAGGGGTGAGGGTGTGGATCGGCACGTTTGAGACGGCGGAGGCCGCGGCTCTGGCGTACGATCAGGCAGCATTATCGACGCGGGGGTCACAGGCAGTGCTGAATTTCCCGGAGGAAGTGGTGAGGGAATCGCTGAGGAAGATGCCGTACAAGACGTGGGAAGACGGTTGCTCTCCGGTGCTGGCCCTCAAGAAAAAGCACACCATGAGACGAAGGTCCAATCCCAGGACTCCTGCTGCTGCCAAAACCCGAATCCAATCCGGTGATGACGACGGCGTGTTGGTGCTGGAGGATTTGGGAGCCGACTATCTGGACCAGCTCTTGACCTTCACTTCTCTTTGA 738 0.561 MDSDSCFFDYHYPQPDEFSTVNSCVSGVQFSCWDDLLLFNDYSLPFHHHSPDYFLSSDAVAKDSSSSSDSNPSSSPGALLESVHEVSSTVQVKEEKTEGASPAPPADPKRVYRGVRRRPWGKFAAEIRDSTRKGVRVWIGTFETAEAAALAYDQAALSTRGSQAVLNFPEEVVRESLRKMPYKTWEDGCSPVLALKKKHTMRRRSNPRTPAAAKTRIQSGDDDGVLVLEDLGADYLDQLLTFTSL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2461 245 SUPERFAMILY DNA-binding domain 111 170 IPR016177 GO:0003677
Prci1g2461 245 CDD AP2 112 170 IPR001471 GO:0003700|GO:0006355
Prci1g2461 245 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Prci1g2461 245 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Prci1g2461 245 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Prci1g2461 245 PANTHER DNA-BINDING DOMAIN 71 240 IPR044808 GO:0003700|GO:0009873
Prci1g2461 245 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Prci1g2461 245 MobiDBLite consensus disorder prediction 92 112 - -
Prci1g2461 245 Gene3D AP2/ERF domain 111 171 IPR036955 GO:0003700|GO:0006355
Prci1g2461 245 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Prci1g2461 245 FunFam Ethylene-responsive transcription factor 2 110 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2461 Prci-Chr1 44802639 44803907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2461 109 240 AP2-EREBP Transcription Factor Family AT3G23240 62.879 3.89e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g2461 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2461 K14516 - gmx:100779524 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2461 1 44802639 44803907 Prci3g3202 3 43170778 43171693 CCT
Prci1g2461 1 44802639 44803907 Prci1g2461 1 44802639 44803907 ECH