Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2460 ATGTCAATGTCTTCCCCAGCATTTCAGCACCCGTGCCCAGATTGGGGCTTCTGGCCAGATCCCTCTGATATTTTCCTGGAATCTTCTCCAAGCATTAATGATTTCTATGAAGATCCAATCCATGATTTTCTCTCCTTCGATACGGTGGACGGTCCAACACGCGAGAATATTAATGATGAAACTAAGACAGAGCAATCGCCAGTGAAGTCAAAAATCAGCAAGGAGAAGACATACATAGGGGTGAGGAAGAGACCGTGGGGAACATTCGCAGCAGAGATCAGAGACACCACCAGGAATGGCAGAAGAGTTTGGCTGGGAACGTTCCAGAGCGCGGAGGAAGCTGCTTTAGCTTACGACCAAGCTGCATTCACCATGAGAGGCAACTCTGCTGTTCTGAATTTTCCGCCGGAGACGGTGAGGCAGTCTCTGCGAGGTATCAAGTATGGCTGCCGCAAGGGCTATTCGCCTGCTTTAGCCCTCAAAGAGAGGCACTACATCCAAAGAAAACTGTCGTCAAAGGCTGAGAAAGACCGAGCCAAGCAGCAATCCCTAGTGGTCGTACTCGAGGACTTGGGTGTTGAATATCTGGAGCAACTTCTCACCATATCTGATTCTGATCAAACTACAAGCCCTGGCTTCTTCAAATAG 648 0.4892 MSMSSPAFQHPCPDWGFWPDPSDIFLESSPSINDFYEDPIHDFLSFDTVDGPTRENINDETKTEQSPVKSKISKEKTYIGVRKRPWGTFAAEIRDTTRNGRRVWLGTFQSAEEAALAYDQAAFTMRGNSAVLNFPPETVRQSLRGIKYGCRKGYSPALALKERHYIQRKLSSKAEKDRAKQQSLVVVLEDLGVEYLEQLLTISDSDQTTSPGFFK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2460 215 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Prci1g2460 215 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Prci1g2460 215 FunFam Ethylene-responsive transcription factor 2 76 137 - -
Prci1g2460 215 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Prci1g2460 215 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Prci1g2460 215 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Prci1g2460 215 CDD AP2 78 135 IPR001471 GO:0003700|GO:0006355
Prci1g2460 215 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Prci1g2460 215 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Prci1g2460 215 PANTHER DNA-BINDING DOMAIN 64 204 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2460 Prci-Chr1 44791294 44792183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2460 35 208 AP2-EREBP Transcription Factor Family AT3G23240 50.276 5.45e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g2460 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2460 K14516 - gmx:100527364 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2460 1 44791294 44792183 Prci1g2460 1 44791294 44792183 ECH