Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2459 ATGTCTTGGCCATCGTATCAGCCGCACCCATGCCCAGATTGGGACTTTTGGCAAGACCCCTCCGATGCTTTCTTGGCCTCTTCATCAAGCCACCAAGTTCATGAAGACCCTTTCCACGATTGTCTTTGCTTCGATATGGTTGACAGGGCGGCAAAACAACGGCCGGCGAGTTCACAGGTCACGGAAGCCGACACTGGTAAGGAAAAAACATACATAGGGGTGAGGAAGAGACCTTGGGGGAAATTTGCAGCAGAGATCAGAGATACTACCAGGAATGGCAGAAGAGTTTGGCTGGGAACGTTTCAGAGCGCGGAGGAAGCTGCCCTTGCTTACGACCAAGCTGCATTCACCATGAGAGGAAACAACGCTGTTCTGAATTTTCCGGTGGAAAAAGTGAAGGAGTCTTTGCAAGACATCAGGTATGGTTGCCGCAAAGGCTGTTCGCCTGCTTTAGCCCTCAAAGAGAGACACTACATCCAGAGAAAACTGTCGTCAAAAGCCCAGAAAGACAAAGCCAAACAGCAATCAGAGGTGGTGGTGCTAGAAGATCTAGGTGTAGAATATCTGGAGCAACTTCTCAGCTTATCCGATGAAACTGCATGCCCAACCCACTTCAAATGA 621 0.496 MSWPSYQPHPCPDWDFWQDPSDAFLASSSSHQVHEDPFHDCLCFDMVDRAAKQRPASSQVTEADTGKEKTYIGVRKRPWGKFAAEIRDTTRNGRRVWLGTFQSAEEAALAYDQAAFTMRGNNAVLNFPVEKVKESLQDIRYGCRKGCSPALALKERHYIQRKLSSKAQKDKAKQQSEVVVLEDLGVEYLEQLLSLSDETACPTHFK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2459 206 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
Prci1g2459 206 SUPERFAMILY DNA-binding domain 70 130 IPR016177 GO:0003677
Prci1g2459 206 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Prci1g2459 206 FunFam Ethylene-responsive transcription factor 2 69 130 - -
Prci1g2459 206 PANTHER DNA-BINDING DOMAIN 39 195 IPR044808 GO:0003700|GO:0009873
Prci1g2459 206 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Prci1g2459 206 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
Prci1g2459 206 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Prci1g2459 206 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Prci1g2459 206 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2459 Prci-Chr1 44764079 44764848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2459 68 201 AP2-EREBP Transcription Factor Family AT3G23240 58.993 3.84e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g2459 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2459 K14516 - gmx:100527364 228.024