LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g2446	ATGAGCTCCTCCGATGCCAAGCCTATACCCTTTAAATCTAAGAAGCCCCGTATATGCCATTCAGCCTCCAAATCCCAATCACCAGACCCCATTTCATTGAGCTCGAAAACTCCAGAGAAGGCCTCACGGCTCTCACATCGTTCCCGAAACCGCGGCGTTGCGCTCTCCATTAGAGAAGTTAGGAAAGTCGCTGAAAGCCTTCAGGAACAGAAAGGCCAGCAGCAAAATCATGACCGTACGGAGCAGATCAAGTCCGCCCGAGGGAAGATTGCACCATCTTTCGCTGAAGTCACCCCCCGTAAATCCAAGGCGTCTGTTGATGAGTCCGTCAAGCTGCCGGAAAAGTATGAAATTTTGGGCGAGTTCTTTGACAGCTTGGATAGCTCGATCCGATTGTTGCATTTGAAAGGTTCCACAACAACTTTCACGAATATCTGCCCCAAAATTGAATGTTTAACCGATAGGAGATTTACTCATAGTCACCTGGCCCAGTTGAAATATATCTTACCTGAGGCGCTTGTTATAAAGAAGGTGCTCAGGTTAGATGAACGGACAAGTTGTATGAAGCCAGACCTCTATGTTACAATAAATCGCGATGCGAAAGAATCCGATTCAAAGTTGCTCTCTGAAGGTGGAAGTGTGTCTTTGAGAAAGTTATTTCGGACACGGTTGAGAGATTTTTATAAATCTCATCCTGAGGTTGATGAAATTCCAGAAGAAATACTGCCCGTGCCATTCAATCACCATAAGCAAGATCATTCTTCAGAGACATTGAGAACTACCCCCTCGTTTGCTACAATAACACCAAATAATGCAGTTGCACATCATTATCAAACTGCAGCGCCCGTTTGCATGCAAGATAATGCCATGGGAATCAATTCAGAGCCTGCTAAGGGAGAAGAAAATTCGTCAGTGCCTGTTAACATGTCAATTGAAGCACATCATCGACAACCAGCAGCAGCCACTCATATGTCTCAATCATTTAGAAGGCGCTTTTCTCATAAATCTGTAAAAGATGAAGCAGATGATGCACAACAGAAGTCACCATCAGGCTCCTGCTCCTTCCCTCAATCTGTCCCAGTTGCAGAATCAATCATGAAGAAAAATTCATCAAGTGTAGATAGTACTATGGGCCCACAAATATGTGCTTCTCCAGCTAATCTCAAATCATCCGATGCTTCTGTTGCCACTCCAAATAAAGTTGCTTCTACTCCGTCTAGGCTGATGACTCTTACACCTTCACTGCCTACCCCTAAGAGATGTTACATGAGCCCTGATGACAGCTCTTACAGTTCACCGGACAAGCTGGTTAGGCGTTCAACTAGTTTGAAGAAGTCATTGAACTTCGACACTCCAGTGAAAAATCGGAGGGCAGGGAATGAAACTGATTTTACTTGCGGCATATCAACTGATGATGTTTTTGATACTCTCCCAGAGAGTCTTCTCCAATCGATTAAAGAAAAGGAGAGAGTGACAATGGAGGAAAGAAATCCAGCTATTGCGCAAGCAAAAAGACGGCAAAAAATGATTGCCAGCCTCCCTAAGCTATTTAACATGATTCATCTCTTGATTCATTCAATGAATCGTTCAGTTGTCACAAAAGAGGAGCTTCTAAGCAAGATAATCTCAAACCACTGTGATATTGTTGACCGTAGAGAAGTTGAAGAGCAGCTGAATTTACTGCTAGAACTAGTTCCAGAGTGGATTTCTGAAAAGTTGGCATCTAGTGGAGATCTGCTTTTCTGCATAAATAAAATGCAGAACCCTGAGACCATACGATCACAGCTTGCAGAAGCAAAGTGA	1803	0.437	MSSSDAKPIPFKSKKPRICHSASKSQSPDPISLSSKTPEKASRLSHRSRNRGVALSIREVRKVAESLQEQKGQQQNHDRTEQIKSARGKIAPSFAEVTPRKSKASVDESVKLPEKYEILGEFFDSLDSSIRLLHLKGSTTTFTNICPKIECLTDRRFTHSHLAQLKYILPEALVIKKVLRLDERTSCMKPDLYVTINRDAKESDSKLLSEGGSVSLRKLFRTRLRDFYKSHPEVDEIPEEILPVPFNHHKQDHSSETLRTTPSFATITPNNAVAHHYQTAAPVCMQDNAMGINSEPAKGEENSSVPVNMSIEAHHRQPAAATHMSQSFRRRFSHKSVKDEADDAQQKSPSGSCSFPQSVPVAESIMKKNSSSVDSTMGPQICASPANLKSSDASVATPNKVASTPSRLMTLTPSLPTPKRCYMSPDDSSYSSPDKLVRRSTSLKKSLNFDTPVKNRRAGNETDFTCGISTDDVFDTLPESLLQSIKEKERVTMEERNPAIAQAKRRQKMIASLPKLFNMIHLLIHSMNRSVVTKEELLSKIISNHCDIVDRREVEEQLNLLLELVPEWISEKLASSGDLLFCINKMQNPETIRSQLAEAK	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g2446	600	Pfam	DNA replication factor CDT1 like	112	182	IPR014939	-
	Prci1g2446	600	MobiDBLite	consensus disorder prediction	383	434	-	-
	Prci1g2446	600	MobiDBLite	consensus disorder prediction	65	84	-	-
	Prci1g2446	600	Coils	Coil	57	77	-	-
	Prci1g2446	600	MobiDBLite	consensus disorder prediction	40	55	-	-
	Prci1g2446	600	Pfam	DNA replication factor Cdt1 C-terminal domain	480	572	IPR032054	-
	Prci1g2446	600	SUPERFAMILY	"Winged helix" DNA-binding domain	105	246	IPR036390	-
	Prci1g2446	600	CDD	Cdt1_c	477	597	IPR032054	-
	Prci1g2446	600	PANTHER	DNA REPLICATION FACTOR CDT1	16	600	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Prci1g2446	600	FunFam	CDT1-like protein a chloroplastic	470	600	-	-
	Prci1g2446	600	MobiDBLite	consensus disorder prediction	383	413	-	-
	Prci1g2446	600	SMART	CDT1_2	112	244	IPR014939	-
	Prci1g2446	600	MobiDBLite	consensus disorder prediction	315	357	-	-
	Prci1g2446	600	CDD	Cdt1_m	95	255	IPR014939	-
	Prci1g2446	600	MobiDBLite	consensus disorder prediction	1	55	-	-
	Prci1g2446	600	Gene3D	-	468	600	IPR038090	-
	Prci1g2446	600	MobiDBLite	consensus disorder prediction	20	39	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g2446	Prci-Chr1	44667118	44670300	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g2446	110	599	Core DNA Replication Machinery Family	AT3G54710	36.686	3.14e-81	262

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g2446	K10727		-	qsa:O6P43_006919	582.793