Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2421 ATGGCTGTCGACGCCCTCCAACTTCGTCGTCATTCTCTCTCCGGACCTCCCTCCGATCCTCCTCCGCTCCCTCCCAAGGCCGTCCGTTTCGGCGGTGTCGCCTCTAAGGAGGCGCATTTTAGAGGCGTGCGTAAGCGTCCCTGGGGCCGCTTCGCCGCGGAGATCCGCGATCCCTGGAAGAAGACCCGAAGGTGGCTCGGAACCTTCGATACCGCCGAGGAGGCTGCTCGGGCCTACGATGAGGCTGCCAGGAGTCTTCGTGGACCCAGGGCAAAGACGAACTTCATCTATGCCGCTGTGCCTGTCGCTCCGTCGGTCCCAATGCCACCGGTGGCAGCTTCCACGGCTAGTGGCGGTGATCGAGATAGCGGGCAGATGTTGGGGAGGCGCGTGGAGTTTTGGAGGCCTCCGTTGCATTGCGTGGCGGATGCTACGGTGGGAGTGCCGGTGAGATCGGAGTACAAGGGATACAAGTTGGAGAATGTGGATGTGGTGGTGAGCGAGGAGAGAAAGTTGCGGAAACAGGAGAAACCGTTAATGCTCGATCTTAACCAACCACCGCCACTCTTCTGA 573 0.6073 MAVDALQLRRHSLSGPPSDPPPLPPKAVRFGGVASKEAHFRGVRKRPWGRFAAEIRDPWKKTRRWLGTFDTAEEAARAYDEAARSLRGPRAKTNFIYAAVPVAPSVPMPPVAASTASGGDRDSGQMLGRRVEFWRPPLHCVADATVGVPVRSEYKGYKLENVDVVVSEERKLRKQEKPLMLDLNQPPPLF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2421 190 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Prci1g2421 190 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Prci1g2421 190 MobiDBLite consensus disorder prediction 1 26 - -
Prci1g2421 190 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Prci1g2421 190 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Prci1g2421 190 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Prci1g2421 190 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Prci1g2421 190 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 116 - -
Prci1g2421 190 CDD AP2 38 95 IPR001471 GO:0003700|GO:0006355
Prci1g2421 190 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Prci1g2421 190 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2421 Prci-Chr1 44388709 44390055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2421 36 123 AP2-EREBP Transcription Factor Family AT5G44210 64.773 2.29e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g2421 AP2 9.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2421 K09286 - qsa:O6P43_006945 236.498