Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2420 ATGGAAGAGGTTGAAGAAACTAACAGAGCAGCTGTTGAAAGCTGTCATAAGTTTCTAAACTTGTTGTCTCACCCCCAAGATCAATTTCAGCATCGGAACTTAAGGGTAGAAGCTGAGGAGGCTGTGGGGAAGTTCAAGAAAGTTGTTTCTCTGCTCAGTAACGGTTTGGGTCATGCAAGAGTCAGGAAACTCAACAGACTTCAAATTCCTATTCCTCAAAGCGCACTCTTGGACATCCCTAATTGTAGAACAAATTATCAATCAAAGAACTTGCAATTTCCCCAAAACAGCTTTAGGGACGAGTCAATTCAGGAATTGAGAAATTCGCTCTCCCTGCGAAATCCATTGCTGGAATTGAGCTCAAGTGGGAAAAGTCCTCTCCAGCTCACCCAACAAGCATCTTCACAGCACTATCAACTCGTTCAGCAGCAGCAACAAAGGTTATTGCTGCAGCAGCATCAACAGCAGATGAAATACCAGGCAGATTTGATGTACCGAAGGAACAATAGTGGCATAAATCTGAATTTTGATAGCTCTAGCTGTACACCTACAATGTCTTCAACTAGGTCTTTTATTTCTTCTTTGAGCATAGATGGAAGCGTAGCTAACATGGATGGAAGTGCCTTTCATTTAATCGGTGCTCCTCTCTCTTCAGATCAGAATTCTCTACAGCATAAAAGAAAGTGTTCTGGCAGAGATGAGGGCAGCGCCAAGTGTGGGAGCAGCAGTACCAGATGCCACTGCTCAAAGAAGAGGTTAGACTTCTTTCTACAGTCCTTGATTGAAAACAGAGTAAAGAGATCAATTAAGGTTCCTGCTATCAGCAACAAGCTTGCAGATATTCCCCCTGATGATTATTCATGGAGAAAGTATGGACAGAAGCCAATCAAGGGCTCTCCTCACCCTAGAGGATACTATAAGTGCAGCAGCATGAGGGGTTGCCCTGCTAGGAAGCATGTTGAGAGGTGCCTGGAAGAACCTTCCATGCTAATTGTTACCTATGAAGGCGAGCATAACCACCCTAAAATACCAACACAACCTGCAAATGCATGA 1053 0.4378 MEEVEETNRAAVESCHKFLNLLSHPQDQFQHRNLRVEAEEAVGKFKKVVSLLSNGLGHARVRKLNRLQIPIPQSALLDIPNCRTNYQSKNLQFPQNSFRDESIQELRNSLSLRNPLLELSSSGKSPLQLTQQASSQHYQLVQQQQQRLLLQQHQQQMKYQADLMYRRNNSGINLNFDSSSCTPTMSSTRSFISSLSIDGSVANMDGSAFHLIGAPLSSDQNSLQHKRKCSGRDEGSAKCGSSSTRCHCSKKRLDFFLQSLIENRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPKIPTQPANA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2420 350 FunFam WRKY transcription factor 65 266 343 - -
Prci1g2420 350 Pfam Plant zinc cluster domain 226 280 IPR018872 -
Prci1g2420 350 Pfam WRKY DNA -binding domain 284 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g2420 350 Gene3D WRKY domain 268 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g2420 350 SUPERFAMILY WRKY DNA-binding domain 280 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci1g2420 350 ProSiteProfiles WRKY domain profile. 277 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g2420 350 SMART WRKY_cls 282 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci1g2420 350 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 346 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2420 Prci-Chr1 44381857 44385163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2420 1 346 WRKY Transcription Factor Family AT2G30590 54.264 5.89e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci1g2420 WRKY 3.5e-26 CL0274