Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2419 ATGGCGAATCAGGTAGTCAAAGTGAAGAGGGAAACGATTGCAGCATGCATGACCTGCCCGCTCTGCAATAAGTTGTTCAGGGAGGCCACCACTATATCTGAATGCCTGCATACGTTTTGCAGGAAGTGCATACACGACAAAATTACTGAAGAGGAATTGGAATGCTGTCCAATATGCAATATTGATTTGGGCTGTGTTCCTCTTGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCTAAAATTTTCCCTTTGAAGAATGTAAAGGCAAAGGCACCAGAAGTTGTCCCCTCAGAACCAGTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGCAACCATGACAGGCAGAAGAACAAAGCCTACAAGAAAGGCTATTGCTCTACGCTCCACTAGTTTTTCCATTGAAAAACCCATTATAAAAAAGGAAGATTCAACTGAAGATCATCCAGAGAGTTCAAGCTCCCCTGATACCATCAACAAGGTTACTCAGTCTACTAGAGAGAACTCGTCCCCTAATGATGCAAGCCAATCCACTCCCAAAAAGGAGAAAAATAATGGGGCTGAACCTTGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTGGTGGAGGTTGCAAGTAGGACTAAATCTTTCAAGTCCAACGTGCAAGGATGTGATGCTAAACAAGAACCTACTCAAATAAATGAGAGTGATTCTCAAGTACAAAAATCCAAAAATAAGGACAACAGACGAAAGTCAAAAGTTGAGGATGAAAAGATTGGCACAGATCCTGCTTCATCAGATACAGCAAAATCCAATAAATTGCGCAGAAATCGCCGAAAAAAGGAACCTGTTTTGGGTGAATCAAGCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGAAAGAATTGGTCCAATATGGTTCTCCTTAGTAGCTTCTGAAGACCAGGATGGAGATGCGCCACTGCCCCAAATTTCTGCAAGTTACTTAAGAATAAAGGACGGGAACATGCCTGTCTCATTTATCCAGAAATACCTAATGAAGAAGTTAGATCTGACCAGCGAAGCAGAGGTTGAGATTAAATGTATGGGTCAACCGGTGGTCCCTACATTGCAACTAAATAACTTGGTTGACTTATGGCTGCAATCAACGTCGACATCACAGAGAATGCCAGCAACCATTGGATCATCAGCAAAAGACTTTGTCATGGTCCTGACCTATGCTCGCAAGGCCCCACCTCCTTGA 1290 0.4287 MANQVVKVKRETIAACMTCPLCNKLFREATTISECLHTFCRKCIHDKITEEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKIFPLKNVKAKAPEVVPSEPVPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKAIALRSTSFSIEKPIIKKEDSTEDHPESSSSPDTINKVTQSTRENSSPNDASQSTPKKEKNNGAEPWEAKLDLWKPLNCLVEVASRTKSFKSNVQGCDAKQEPTQINESDSQVQKSKNKDNRRKSKVEDEKIGTDPASSDTAKSNKLRRNRRKKEPVLGESSISPQAVLDANSAKMKERIGPIWFSLVASEDQDGDAPLPQISASYLRIKDGNMPVSFIQKYLMKKLDLTSEAEVEIKCMGQPVVPTLQLNNLVDLWLQSTSTSQRMPATIGSSAKDFVMVLTYARKAPPP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2419 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Prci1g2419 429 SUPERFAMILY RING/U-box 14 85 - -
Prci1g2419 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 113 IPR013083 -
Prci1g2419 429 MobiDBLite consensus disorder prediction 112 132 - -
Prci1g2419 429 MobiDBLite consensus disorder prediction 98 202 - -
Prci1g2419 429 MobiDBLite consensus disorder prediction 251 274 - -
Prci1g2419 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Prci1g2419 429 MobiDBLite consensus disorder prediction 166 198 - -
Prci1g2419 429 MobiDBLite consensus disorder prediction 150 165 - -
Prci1g2419 429 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Prci1g2419 429 SMART ring_2 19 59 IPR001841 -
Prci1g2419 429 CDD RING-HC_PCGF 17 60 - -
Prci1g2419 429 MobiDBLite consensus disorder prediction 231 250 - -
Prci1g2419 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
Prci1g2419 429 MobiDBLite consensus disorder prediction 231 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2419 Prci-Chr1 44359744 44366272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2419 2 348 C3H Transcription Factor Family AT2G30580 53.736 5.90e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2419 K16277 - gmx:100793731 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2419 1 44359744 44366272 Prci3g3240 3 43486499 43493084 CCT
Prci1g2419 1 44359744 44366272 Prci1g2419 1 44359744 44366272 ECH