Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2407 ATGGGGATCAATTTCGACGGTGAGTTCATGAATCTGAAGGACACGGAGCTAAGGTTGGGATTGCCAGGAGGGGATGAAGAAGATCAACGTTCATGCAGCGTCAGGAGCAACAAGAGGTGTCGGCGGGAATCAAGTGAGGATGAGGAGTCATGCGTAAGCAAGAACAACGCCTGTAACAGTTCCGACGATCAAGATAACGCCCCACCGGGAAAGGTACAAGTAGTGGGATGGCCACCCATTCGATCTTACAGGAAGAATTGTGTCCAGCAAAGAAAGGGATCGCAAGAGGGTGACGGGGCCGGAAATATGTATGTGAAAGTGAGCATGGACGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAACAGCTACACACAACTCCTCAAGGCCTTGCAGAACATGTTCAAGTGCACCTTTGGTGAATACTCAGAAAGGGAAGGGTACAACGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGCGACTGGATGCTTGTTGGAGATGTTCCATGGAATATGTTCATGTCATCTTGCAAGAGGCTGAGAATCATGAAGGGATCAGAGGCTAAGGGATTGGGTGGTAATTTATGA 600 0.48 MGINFDGEFMNLKDTELRLGLPGGDEEDQRSCSVRSNKRCRRESSEDEESCVSKNNACNSSDDQDNAPPGKVQVVGWPPIRSYRKNCVQQRKGSQEGDGAGNMYVKVSMDGAPYLRKIDLKVYNSYTQLLKALQNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFMSSCKRLRIMKGSEAKGLGGNL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2407 199 ProSiteProfiles PB1 domain profile. 102 189 IPR000270 GO:0005515
Prci1g2407 199 Gene3D - 97 198 - -
Prci1g2407 199 MobiDBLite consensus disorder prediction 51 67 - -
Prci1g2407 199 MobiDBLite consensus disorder prediction 19 50 - -
Prci1g2407 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 193 IPR003311 GO:0005634|GO:0006355
Prci1g2407 199 SUPERFAMILY CAD & PB1 domains 100 188 - -
Prci1g2407 199 FunFam Auxin-responsive protein 97 199 - -
Prci1g2407 199 MobiDBLite consensus disorder prediction 19 75 - -
Prci1g2407 199 Pfam AUX/IAA family 40 196 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2407 Prci-Chr1 44263546 44264950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2407 105 195 B3 DNA Binding Superfamily AT2G46530 38.462 2.11e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci1g2407 AUX_IAA 1e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2407 K14484 - gmx:100780752 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2407 1 44263546 44264950 Prci1g2407 1 44263546 44264950 ECH