Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2405 ATGGCGAATAATCCTTCCGACGCCCCCGCCGACGACTTCCTCGAACAAATCCTTGGGCTCCCAACTTTTGCTTCAACCGACTCCGGCTTAGCCGGCACGGCTGCTCCGCCTCCGATGATGCTGCAGCTCAACTCCGGCGATGGCACCGACCACCTCACTTCTGTTGGCGCTGGCGGCGGTAGTGGTGCCTTTCATGCTCCGGTGTATCAGCTAGGACTGAGCTTGGAGCAAGGGAAAGGAGGTTTTCTGAAGCCCGAGGAGGCTTCTGGAAGTGGGAAGCGATTTCGTGACGATATCATCGATAATAGAGCGAAGAATGTTTTTCATGGTCAACCCTTGCCTACTACCATTCCTGCTGCTCCACATCCACCAGCAATGCGTCCAAGAGTCCGAGCTAGAAGAGGACAAGCTACAGATCCACACAGTATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCTTTGCAGGAACTTGTTCCCAGTGTCAATAAGACAGATAGAGCTGCCATGCTAGATGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTTAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTGGCACCGCTGGTAACTGACATTCCATTGTCGTCGGTTGAGGAAGAAGGAAGTGAAGGTGGAAGAAATCAACCAGCTTGGGAGAAATGGTCAAATGATGGCACAGAAACACATGTGGCCAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAGTTCCTTCAATCAAAGGCTCTTTGCATCATGCCCATCTCGCTGGCATCAGCGATATACCAGTCACAGCCACCGGACACCTCCAGTATAGTCAAGCCAGAAACTAGCCCTCCTTCATAG 879 0.5131 MANNPSDAPADDFLEQILGLPTFASTDSGLAGTAAPPPMMLQLNSGDGTDHLTSVGAGGGSGAFHAPVYQLGLSLEQGKGGFLKPEEASGSGKRFRDDIIDNRAKNVFHGQPLPTTIPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTETHVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETSPPS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2405 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Prci1g2405 292 SMART finulus 142 191 IPR011598 GO:0046983
Prci1g2405 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 271 - -
Prci1g2405 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Prci1g2405 292 FunFam Basic helix-loop-helix transcription factor 131 193 - -
Prci1g2405 292 Gene3D - 131 193 IPR036638 GO:0046983
Prci1g2405 292 MobiDBLite consensus disorder prediction 110 140 - -
Prci1g2405 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2405 Prci-Chr1 44239976 44244512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2405 64 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.000 7.16e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g2405 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2405 - - qsa:O6P43_010567 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2405 1 44239976 44244512 Prci1g2405 1 44239976 44244512 ECH