Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2385 ATGTTTCCTGCGGCGATGTCCAATTCTACTACTTGTTTGTCCGTAGAATCCTCTGTCTCTTCTGCTACTAGACTTCATGACCTCTCTGGAGTAAATCCCGTACTCTCCACAATTCCTCCTCAGCAGCCTGCAAAGATCAAGAAGAAGAGAAGCCTCCCCGGAAACCCAGACCCCGATGCAGAAGTGATAGCCTTATCCCCGAAGACTCTTCTGGCCACCAATAGGTTTGTGTGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAACTTCACAGGAGAGGCCATAACCTGCCGTGGAAACTGAAGCAAAGGAACAGCAAAGAGGTGAAAAAGAGAGCCTACGTTTGCCCAGAGCCTTCATGCGTTCATCACAACCCCTCGAGGGCTCTGGGGGATCTTACTGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGCGAGAAATGCTCAAAGATCTACGCGGTTCAGTCAGATTGGAAAGCGCACTCTAAAACCTGTGGAACTAAAGAATATAGATGTGACTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTCTCAGCAAATCAACTAGCCTCGACCACCACGAACCCACTGTTCCAATCTCTCTTCCTCTATCCCAACCAACACAGCTTCCTCAATAATCAATGGAACCCATCTCAAGAAAACCCTAACCCTAGCAACGCTATCCAAATCAAGCCCGAAGCTCAACATTTCCAGATGCCTCCTTCGTTTCTTCAGGAACCTCCTCATTCTCATCACAAGAGCTCCATGATAAACACACCTTTTCGAAACCTCCACATGGCGACGCAACCTTCCTCAAACTCTGCCACGTCAGCCCACCTTTCTGCCACCGCTCTCCTCCAAAAGGCTGCCACCGTCGGTGCCACCCAAATCACGCCCCAACCATCCCAGTCTCAGCCTCATCACCTGACTCATCAGCTCAGCGTGAGCGAGTTTGGATCAGTGAATCAGCTCGGGTCGGTGGTGCCTGACTACATGAGAGGGTTCGCGACTCGGAATCTTAAGAATGAGCATCTAACGAGGGATTTCCTGGGTCTCACCGACGACGCCCACAACGGAGGAGACGGAGAGAACGGCGGAGCGGTCAACCTGAAGGATATCATGACGTTCACGGGGGATGTGTACGAGCACCACCATCACCACTCGCTCTTCAAGTACCGACAAGGTTTCGGATTCGTTGGGACTTCCAATGCCCCCGAGACGTGGACCAATTATTAA 1314 0.5008 MFPAAMSNSTTCLSVESSVSSATRLHDLSGVNPVLSTIPPQQPAKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLASTTTNPLFQSLFLYPNQHSFLNNQWNPSQENPNPSNAIQIKPEAQHFQMPPSFLQEPPHSHHKSSMINTPFRNLHMATQPSSNSATSAHLSATALLQKAATVGATQITPQPSQSQPHHLTHQLSVSEFGSVNQLGSVVPDYMRGFATRNLKNEHLTRDFLGLTDDAHNGGDGENGGAVNLKDIMTFTGDVYEHHHHHSLFKYRQGFGFVGTSNAPETWTNY 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2385 437 FunFam protein indeterminate-domain 12-like 55 123 - -
Prci1g2385 437 Gene3D Classic Zinc Finger 145 210 - -
Prci1g2385 437 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Prci1g2385 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Prci1g2385 437 SMART c2h2final6 152 172 IPR013087 -
Prci1g2385 437 SMART c2h2final6 76 98 IPR013087 -
Prci1g2385 437 SMART c2h2final6 117 147 IPR013087 -
Prci1g2385 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 388 IPR031140 -
Prci1g2385 437 Gene3D Classic Zinc Finger 55 124 - -
Prci1g2385 437 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Prci1g2385 437 Pfam Zinc finger, C2H2 type 76 98 IPR013087 -
Prci1g2385 437 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Prci1g2385 437 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2385 Prci-Chr1 44088779 44093170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2385 14 426 IDZ Gene Family AT4G02670 50.000 1.47e-124 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g2385 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2385 K25870 - qsa:O6P43_010584 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2385 1 44088779 44093170 Prci3g3768 3 46583004 46585337 CCT