Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2384 ATGAATTATCTGTACAGAATTAAAGAAGAGTACTTGGAACCATCTTCATCCGACGTAGGAGGTGAGCCAGCAATGGTTCTTCCTCCACAGCCAGTGCAGGGACTTCATGAAACAGGACCACCTCCATTCCTCAACAAGACGTTTGATATGGTGGATGACCCTTCTACCGATCACATAGTCTCGTGGAGCAGAGGTGGAACAAGTTTTGTTGTTTGGGATCCATGCTCTTTCTCTACCAATCTTCTTCCTAGATGCTTCAAGCACAACAATTTCTCAAGCTTTGTCCGCCAATTGAACACTTACGGTTTTAGAAAAATTGATCCCGATATATGGGAGTTTGCAAACGAAGGATTTATGAGAGGACACAAGCATCTGCTGAGGAACATACGAAGAAGGAGAGCGCCTTCTCAGGTTACTCCATCCTCCCAAGCACCAGGTCACTGTGCTGAAGTCGGCAGGTTTGAAGTAGATGAAGAAATTCTACGTTTAAGGCGTGACCGGCAAGTGTTGATGATAGAACTCGTGAAGCTTAGACAGCAGCAACAGAACACCAGAGCCTACCTTCAGGCGATGGAGCAGAGGTTAGAAGGCACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTAGCAAGAGCATTGAAAAATCCAGCATTTATACACCAACTACTCCAACAGAGGAAGAGAAAGGAACTGGAGGAAGCCATGACTAAGAAAAGAAGAAGGTCAATTGAGCAAATACCAAGTGATGTTGCTGAATCAAGCAGTGAAAGTGAGGGAAGGAATCATGTTAAAGTTGAGCCCACAGAAGTTGGGAATTATGGGTTTGAAGTGTCTGAGCTTGAAGTGCTAGCTATGGAAATGCAAGGTCTTGGTAGGCGTAAAAGAGAACAGGAAACATTTGAATCACCAGAGAGGCTGGACAACGAACTTGATGAAGGATTCTGGGAAGAGTTTTTTAGTGAAAATGTTGAGGGTGAACTAGATATTCCAAGCGATGCAGGTGAAGGTGAAGATATCAATGTCTTGGCCAAGCGCTTGGGTTACATGGGTTCAAGTCCTCAGTGA 1065 0.4441 MNYLYRIKEEYLEPSSSDVGGEPAMVLPPQPVQGLHETGPPPFLNKTFDMVDDPSTDHIVSWSRGGTSFVVWDPCSFSTNLLPRCFKHNNFSSFVRQLNTYGFRKIDPDIWEFANEGFMRGHKHLLRNIRRRRAPSQVTPSSQAPGHCAEVGRFEVDEEILRLRRDRQVLMIELVKLRQQQQNTRAYLQAMEQRLEGTEMKQQQMMAFLARALKNPAFIHQLLQQRKRKELEEAMTKKRRRSIEQIPSDVAESSSESEGRNHVKVEPTEVGNYGFEVSELEVLAMEMQGLGRRKREQETFESPERLDNELDEGFWEEFFSENVEGELDIPSDAGEGEDINVLAKRLGYMGSSPQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2384 354 MobiDBLite consensus disorder prediction 233 267 - -
Prci1g2384 354 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g2384 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 267 IPR027725 -
Prci1g2384 354 FunFam Heat shock transcription factor 1 36 133 - -
Prci1g2384 354 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g2384 354 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g2384 354 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g2384 354 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g2384 354 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Prci1g2384 354 Coils Coil 160 194 - -
Prci1g2384 354 Gene3D - 35 133 IPR036388 -
Prci1g2384 354 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2384 Prci-Chr1 44080188 44082840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2384 22 352 HSF AT3G22830 48.774 2.23e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci1g2384 HSF_DNA-bind 6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2384 K09419 - gmx:100794264 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2384 1 44080188 44082840 Prci3g3288 3 43789327 43793563 CCT