Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2366 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCCTTCGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAGGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGATAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAGAGTTCGAAATCCCTTTATAGTTGAATATAAAGATTCCTGGGTTGAAAAGGGTTGTTTCGTCTGCATTGTCATTGGCTATTGTGAAGGTGGAGACATGGCAGAAGCTATTAAGAAGGCTAATGGTGTTCATTTTTCAGAAGAGAAACTTTGTAAATGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAACCATGTCCTTCATCGTGATGTCAAGTGTTCTAATATATTCTTGACGAAAGATCAAGACATACGACTAGGTGATTTTGGTCTGGCAAAATTACTAACATCTGATGATCTTGCTTCCTCTGTTGTTGGGACTCCGAGTTACATGTGTCCCGAGCTTCTTGCTGATATACCCTATGGTTCAAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGTCTGCCCACAAGCCAGCCTTCAAAGCTTTTGATATGCAAGCGTTGATTAACAAAATAAACAAGTCAATTGTGGCTCCTCTGCCAACCATGTATTCTAGTGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGACCAAGTGCTTCAGAGTTGCTAAATCATCCGCATCTTCAGCCCTACATTCTTAAAATTCACCTAAAACTAAACAGCCCCAGAAGAAGTACTTTTCCATTCCAGTGGCCTGAATCAAACTATGTAAGGAGAACTCGGTTTGTGGAGCCAGATTCTGTTTCTACCCTTTCTGATAGGGATAAACACTTGTCGTTTAGCAATGACAGGGCCTTGAATCCTAGTATCTCTGGAACTGAGAAAGATTCTCAGTGTTCTACTCAAAATGGTAATGGATTTGCCTCTCGTTCAAGGGAGAAACTCTGTGAACTAACCATTGGTTGTGTCCGCGAAGAATACATAGCTAACAAGTCAAAAGCCACAAAGTTCTCAACTGTTGACGGTAATACTCCAAGATTAAGAACAGCTAAGGATTCTGCCACCCCGAGAAGGCAGACAACCCCATCAAAAATATTTCATACTGGTTCAAAGCGTGATTCACTTCCGGTGTCTCATACTCCGGCAGGAAATTCTTCCCCACCATCACGTAGAGCATCGCTTCCACTGCGCCTGCCTACAAGAGTCATGACCACAGAAACCTCTTATAGAGCGAAAGTTGGCCTCCTCCAGAGTGTGGAGTCTCCAGACATTTCTGTTAATGCTCCACGAATTGACAAGATAGCTGAATTCCCTCTTGCATCTTCTGAGGATGCTATCTTCGCTGTCCCCAAGTCATCAACATCTGCCATGTGCTCTTCTAGTTCACCAGTGGGTGCTGTTTGCTCAATCACAAAGGACAAATGCACTGTCCAGGTTGTGGACAAAGCCATGGCAGCCCCTCCCAGCGTGAGTGATACTTGTCCTGAAGCTTCAGGTCCAGGATATGCAAGTGAATGCTCTGAGCGTGTCACGGCTGACGTTTCAAGTCGTTCATCAGCAGAGTCACGACAGCACCGGTTTGACACCTCATCTTACCAGCAACGTGCTGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCAAGACTCCTGCAACAACAGAGATTTGAAGAACTTGGAGTGTTGTTGAAGCCATTTGGACCTGAGAAGGTTTCTCCAAGAGAAACAGCCATTTGGTTGACGAAGAGTTTTAAAGAAACTCTGGTCTAG 1857 0.4448 MEQYEILEQIGKGSFGSALLVRHKHERKKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANGVHFSEEKLCKWLVQLLMALDYLHANHVLHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMSAHKPAFKAFDMQALINKINKSIVAPLPTMYSSAFRGLVKSMLRKNPELRPSASELLNHPHLQPYILKIHLKLNSPRRSTFPFQWPESNYVRRTRFVEPDSVSTLSDRDKHLSFSNDRALNPSISGTEKDSQCSTQNGNGFASRSREKLCELTIGCVREEYIANKSKATKFSTVDGNTPRLRTAKDSATPRRQTTPSKIFHTGSKRDSLPVSHTPAGNSSPPSRRASLPLRLPTRVMTTETSYRAKVGLLQSVESPDISVNAPRIDKIAEFPLASSEDAIFAVPKSSTSAMCSSSSPVGAVCSITKDKCTVQVVDKAMAAPPSVSDTCPEASGPGYASECSERVTADVSSRSSAESRQHRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETLV 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2366 618 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g2366 618 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Prci1g2366 618 MobiDBLite consensus disorder prediction 367 423 - -
Prci1g2366 618 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Prci1g2366 618 MobiDBLite consensus disorder prediction 312 339 - -
Prci1g2366 618 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Prci1g2366 618 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Prci1g2366 618 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 574 - -
Prci1g2366 618 MobiDBLite consensus disorder prediction 367 421 - -
Prci1g2366 618 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g2366 618 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Prci1g2366 618 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g2366 618 CDD STKc_Nek 3 258 - -
Prci1g2366 618 SUPERFAMILY Protein kinase-like (PK-like) 1 314 IPR011009 -
Prci1g2366 618 MobiDBLite consensus disorder prediction 310 340 - -
Prci1g2366 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2366 Prci-Chr1 43965990 43972139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2366 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 9.10e-38 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Prci1g2366 Pkinase 6.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2366 K08857 - gmx:100810347 962.6