Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2326 ATGGATCAGCCCCCATCGTCTGCTGCTAGACGCAGCTTGAAGCGCAAGCTCGAACAGGAATTCGCGGAAGAAGGAGCAGATCAACCAACGGCCGATCGTAAAGTTTTGGTTGTTGAACCTCAACAGCCTCGTCAGGATCTGTTGAGTGAAATTGTGTCGCAAGTCACTATTCTCAACTCCACTTTCTCATCCTCTCAGTCGGATCGCCTAGCGGCCAAGCGTGCTGTTCATGTTCTCTGTGAACTCGCAAAGAACGAGGAAATCGTGAATAGTATAGTCGATTGCGGAGCCATTCCTGCTTTGTTGAGGCATCTGAAAGCACCAGAACCGGTTAGAGAAGGTCATGGTGGTCCCAAGCCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTTCGTCATTGGACTTCTTGCTGTTAAACCAGAGCATCAACAACACATTGTCGATGCTGGAGCTTTGCCCTATCTTATGGATTTGTTGAAGAGGCACAAGACCTGTGGCAATTCTCGGGCACTTACTGGTCTTATAAGGAGAGCAGCTGATGCCATCACGAACCTTGCGCATGAAAATGGCATCATCAAGACCCGTGTTAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTTGATGATGCAAAGGTACAAAGGGCAGCTGCAGGGGCTCTACGAACTCTTGCATTTAAAAATGATGAGAACAAAAACCAGATTGTTGGATGCAATGCGCTACCTACTCTTATACTAATGCTTGGATCAGAGGATGCTGCAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTCCACTCTTCTCCAAACATAAAGATGGAAGTTCTTCTAGCTGGAGCTCTACAACCTGTTATTGGATTACTTAGATCTTGCTGTTCGGAGAGTCAAAGAGAAGCAGCCCTTTTGATTGGTCAATTTGCTGCAACAGATTCTGATTGCAAGGTTCATATTGCTCAAAGAGGGGCTATCCAGCCACTGATTGACATGCTTAAGTCTCCAGATGCACAGCTTCGGGAAATGTCGGCTTTTGCACTTGGGAGACTGGCTCAGGACACACACAATCAAGCTGGTATTGCTTATAGTGGAGGTATAGAGCCTCTACTCAACCTTCTGTGCTCGAAGAATGGAGCTCTCCAACATAATGCAGCCTTTGCTCTATACGGTCTTGCTGATAATGAGGACAATGTTGCGGATATTATTAAGGTTGGCGGTGTTCAAAAACTACAGGATGGAGATTTCAAAGTTCAACCTACAAAAGAGTGCGTAGGAAAGACAATGAAAAGATTAGAGGAGAAAATGCATGGGCGAGTGCTGAAACAATTATTGTATCTTATGCGTTTTGGAGAAAAGGTTGTTCAAAGATGCGTGGCTCTGGCTCTTGCTCATTTATGTACCCCTGATGATCGCGAATTTATTTTTGTTGACAACAACGGACTTGAGTTGTTGCTGGATCTTCTTGAATCCACAAACATCAAACAGAAACGTGATGCTTCAATGGCACTTCACTCGTTGGCTGTCAGAACCACATCTGTCTCTCCTTTTGATGGTGCTCCTCCATCCCCGACTCCTCAGGTATACTTGGGCGAGCAATATGTAAACAATCCTACACTTTCTGATGTCACGTTTTTAGTTGAAGGTAAACGCTTCTATGGCCACCGAATTTGCTTACTTGCTTCCTCTGATACGTTTCGAGCAATGTTTGATGGTGGTTACAGGGAAAGGGAAGCCAAAGATATAGAGATTCCTAATATTAAATGGGATGTCTTTGAGTTGATGATGAGATTCATTTACACAGGAACCGTCGATGTCAATTTGGATATTGCTCAGGATCTCCTAGGAGCTGCTGATCAGTATCTTTTGGACGGTCTTAAAAGACACTGTGAATGTGCAATTGCTCAGGATGTCTCCGTGGAAAATGTTTCTCTTATGTACGAGTTATCAGAGGCATTCAATGCCATGTCACTCAGGCAAGCATGCATACTATTTCTGTTGGAGCAATTTGATAAACTGAGCGCCAAACCATGGTATTGCCGGCTGATGCGTCGCATCGTACCAGATATACGCGAATTTTTCAGAGGTTTACTCACCAAGCCTACACGAGCGGACTCGTGA 2127 0.4499 MDQPPSSAARRSLKRKLEQEFAEEGADQPTADRKVLVVEPQQPRQDLLSEIVSQVTILNSTFSSSQSDRLAAKRAVHVLCELAKNEEIVNSIVDCGAIPALLRHLKAPEPVREGHGGPKPYEHEVEKGCAFVIGLLAVKPEHQQHIVDAGALPYLMDLLKRHKTCGNSRALTGLIRRAADAITNLAHENGIIKTRVRMEGGIPPLVELLEFDDAKVQRAAAGALRTLAFKNDENKNQIVGCNALPTLILMLGSEDAAIHSEAVGVIGNLVHSSPNIKMEVLLAGALQPVIGLLRSCCSESQREAALLIGQFAATDSDCKVHIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDTHNQAGIAYSGGIEPLLNLLCSKNGALQHNAAFALYGLADNEDNVADIIKVGGVQKLQDGDFKVQPTKECVGKTMKRLEEKMHGRVLKQLLYLMRFGEKVVQRCVALALAHLCTPDDREFIFVDNNGLELLLDLLESTNIKQKRDASMALHSLAVRTTSVSPFDGAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYGHRICLLASSDTFRAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTVDVNLDIAQDLLGAADQYLLDGLKRHCECAIAQDVSVENVSLMYELSEAFNAMSLRQACILFLLEQFDKLSAKPWYCRLMRRIVPDIREFFRGLLTKPTRADS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2326 708 SUPERFAMILY ARM repeat 363 511 IPR016024 -
Prci1g2326 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 235 IPR000225 GO:0005515
Prci1g2326 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Prci1g2326 708 MobiDBLite consensus disorder prediction 9 30 - -
Prci1g2326 708 Pfam Armadillo/beta-catenin-like repeat 315 354 IPR000225 GO:0005515
Prci1g2326 708 Pfam Armadillo/beta-catenin-like repeat 196 228 IPR000225 GO:0005515
Prci1g2326 708 Pfam Armadillo/beta-catenin-like repeat 231 270 IPR000225 GO:0005515
Prci1g2326 708 Pfam BTB/POZ domain 536 637 IPR000210 GO:0005515
Prci1g2326 708 MobiDBLite consensus disorder prediction 1 34 - -
Prci1g2326 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 705 IPR044282 -
Prci1g2326 708 Gene3D - 428 518 IPR011989 -
Prci1g2326 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Prci1g2326 708 Gene3D - 30 417 IPR011989 -
Prci1g2326 708 SMART arm_5 85 138 IPR000225 GO:0005515
Prci1g2326 708 SMART arm_5 356 396 IPR000225 GO:0005515
Prci1g2326 708 SMART arm_5 471 511 IPR000225 GO:0005515
Prci1g2326 708 SMART arm_5 315 355 IPR000225 GO:0005515
Prci1g2326 708 SMART arm_5 273 313 IPR000225 GO:0005515
Prci1g2326 708 SMART arm_5 189 229 IPR000225 GO:0005515
Prci1g2326 708 SMART arm_5 139 187 IPR000225 GO:0005515
Prci1g2326 708 SMART arm_5 231 271 IPR000225 GO:0005515
Prci1g2326 708 SUPERFAMILY ARM repeat 63 414 IPR016024 -
Prci1g2326 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Prci1g2326 708 SUPERFAMILY POZ domain 534 637 IPR011333 -
Prci1g2326 708 SMART BTB_4 543 640 IPR000210 GO:0005515
Prci1g2326 708 ProSiteProfiles BTB domain profile. 543 610 IPR000210 GO:0005515
Prci1g2326 708 Gene3D Potassium Channel Kv1.1; Chain A 534 678 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2326 Prci-Chr1 43637570 43643579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2326 190 410 U-box Gene Family AT5G67340 27.511 8.66e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Prci1g2326 BTB 1.8e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2326 - - sind:105165291 1052.35