Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2299 ATGAATAATGAAGACACGCGCAGAGATTTAAAAAGAAAGTTCCCACATGTGGACCGGTTGCAGGAGCATGGATCTTATAACAAAAATTTGCTTCCTCCTGGTTGGTTGGGCTGCCCAGCGTATGGTCAAGAAATAGGATGCATTATCCCTTCGAAGGTTCCGCTTGGTGAATCCTTTGATGATATCATTACAAGTCAAAAATATTCTCCCAAGCAGGCAATTCTTCAACAAAGACATTTAGGTAGACAAATCGGTCTAGTGATTGATTTGACAAACACTACTCGTTACTACCCAATATCAGATTGGACCAGAGAAAGAATTCGTCATGTTAAGATAAGATGCAAAGGAAGGGATTCCGTGCCCGACGATGAATCTGTAAACAGATTTTGCAATGAGGTCCTGGGTTTTCTCTCCCGAAGAACAAACACAAATGAATATATATTCGTGCATTGCACCCATGGGCACAATCGCACTGGCTATATGATTGTTCATTTTCTTGTCCGCACAGAATCAATTTCAGTCACTGAGGCAATGAATAAATTTTCTGCAGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGATGCTTTGTACATGTATTATCATGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAGTGGAAGAGACTTGCTGATCCTGAGTTTCATCGCGCAGTTGACAAATCTGTAGAAAATATTGGTGGTGTTCCTTTGCATGAGAATATCACGCGGAATGGAGTATTGACAAACGATGATGTTTTAGGAGATCCTGTACATTCAAATCAACTGCATTCAATGCGACTAGAGTGTTACCAACTGCTTAAGTTGGGCACAGGGGGAAGGGGATCTTTGCAGTTTCCAGGATCACATCCTGTTTCCCTCAACAGGGACAATGTACAACTCTTAAGACAACGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTTTATGATGTTGATCACCTGTGATGGATGTTATTTGATTGACAGAAAGTTTCATTTTCGAAAGGTCCATATGCGGTTTCCTTGCAGATATTTGAATGGGGGCACACCTGAAAAGAATCACCACTATACATTACTTGATGGCGAGATGATAATTGACAAGGATCCACATACACAAAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCTATTAATCGAGTTTCTGTGACTGAGCTGCCTTTCTATGAACGTTGGAAACTGCTAGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGCTCTTTGCAAGAGTATAAATCCTTATTATCGATATGACTTGGAGCCATTTAGTATGAGGAGGAAGGGTTTTTGGTTACTGTCCACTGTGTCAAAGCTTCTCAATAAATTCATCCCGCAACTCTCCCATCCGTCAGATGGTCTTGTGTTCCAGGGCTGGGATGATCCTTATGTCCCCCGCACACATGAGGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGACGCATCGGATGCATCTTCCTATTCAGGGAAAATCATTGAATGCTACTGGGACCCCAAGGAGAATCATTGGGTCTGTATGCGGATAA 1599 0.419 MNNEDTRRDLKRKFPHVDRLQEHGSYNKNLLPPGWLGCPAYGQEIGCIIPSKVPLGESFDDIITSQKYSPKQAILQQRHLGRQIGLVIDLTNTTRYYPISDWTRERIRHVKIRCKGRDSVPDDESVNRFCNEVLGFLSRRTNTNEYIFVHCTHGHNRTGYMIVHFLVRTESISVTEAMNKFSAARDPGIYKQDYIDALYMYYHERKPEEVVCPQTPEWKRLADPEFHRAVDKSVENIGGVPLHENITRNGVLTNDDVLGDPVHSNQLHSMRLECYQLLKLGTGGRGSLQFPGSHPVSLNRDNVQLLRQRYYYATWKADGTRFMMLITCDGCYLIDRKFHFRKVHMRFPCRYLNGGTPEKNHHYTLLDGEMIIDKDPHTQKQERRYLIYDLMAINRVSVTELPFYERWKLLEKEVIEPRNMEREALCKSINPYYRYDLEPFSMRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFETHRMHLPIQGKSLNATGTPRRIIGSVCG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2299 532 CDD RNA_5'-triphosphatase 34 200 - -
Prci1g2299 532 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 196 IPR000387 GO:0016311|GO:0016791
Prci1g2299 532 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 259 493 - -
Prci1g2299 532 SMART dsp_5 54 204 IPR020422 GO:0006470|GO:0008138
Prci1g2299 532 FunFam mRNA capping enzyme, putative 253 490 - -
Prci1g2299 532 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Prci1g2299 532 Pfam Dual specificity phosphatase, catalytic domain 80 202 IPR000340 GO:0008138|GO:0016311
Prci1g2299 532 Gene3D Protein tyrosine phosphatase superfamily 6 224 IPR029021 -
Prci1g2299 532 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 219 IPR029021 -
Prci1g2299 532 FunFam mRNA capping enzyme family protein 27 237 - -
Prci1g2299 532 Pfam mRNA capping enzyme, catalytic domain 294 492 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2299 532 CDD Adenylation_mRNA_capping 265 493 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2299 532 PIRSF mRNA_capping_HCE 18 513 IPR017074 GO:0004484|GO:0006370|GO:0140818
Prci1g2299 532 PANTHER MRNA-CAPPING ENZYME 27 508 - -
Prci1g2299 532 Gene3D DNA ligase/mRNA capping enzyme 253 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2299 Prci-Chr1 43492589 43499700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2299 25 504 Protein tyrosine phosphatase (PTP) family AT3G09100 60.656 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2299 - K13917 gmx:100778292 850.892