Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2298 ATGAATAATGAAGACACGCGCAGAGATTTAAAAAGAAAGTTCCCACATGTGGACCGGTTGCAGGAGCATGGATCTTATAACAAAAATTTGCTTCCTCCTGGTTGGTTGGGCTGCCCAGCGTATGGTCAAGAAATAGGATGCATTATCCCTTCGAAGGTTCCGCTTGGTGAATCCTTTGATGATATCATTACAAGTCAAAAATATTCTCCCAAGCAGGCAATTCTTCAACAAAGACATTTAGGTAGACAAATCGGTCTAGTGATTGATTTGACAAACACTACTCGTTACTACCCAATATCAGATTGGACCAGAGAAAGAATTCGTCATGTTAAGATAAGATGCAAAGGAAGGGATTCCGTGCCCGACGATGAATCTGTAAACAGATTTTGCAATGAGGTCCTGGGTTTTCTCTCCCGAAGAACAAACACAAATGAATATATATTCGTGCATTGCACCCATGGGCACAATCGCACTGGCTATATGATTGTTCATTTTCTTGTCCGCACAGAATCAATTTCAGTCACTGAGGCAATGAATAAATTTTCTGCAGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGATGCTTTGTACATGTATTATCATGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAGTGGAAGAGACTTGCTGATCCTGAGTTTCATCGCGCAGTTGACAAATCTGTAGAAAATATTGGTGGTGTTCCTTTGCATGAGAATATCACGCGGAATGGAGTATTGACAAACGATGATGTTTTAGGAGATCCTGTACATTCAAATCAACTGCATTCAATGCGACTAGAGTGTTACCAACTGCTTAAGTTGGGCACAGGGGGAAGGGGATCTTTGCAGTTTCCAGGATCACATCCTGTTTCCCTCAACAGGGACAATGTACAACTCTTAAGACAACGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTTTATGATGTTGATCACCTGTGATGGATGTTATTTGATTGACAGAAAGTTTCATTTTCGAAAGGTCCATATGCGGTTTCCTTGCAGATATTTGAATGGGGGCACACCTGAAAAGAATCACCACTATACATTACTTGATGGCGAGATGATAATTGACAAGGATCCACATACACAAAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCTATTAATCGAGTTTCTGTGACTGAGCTGCCTTTCTATGAACGTTGGAAACTGCTAGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGCTCTTTGCAAGAGTATAAATCCTTATTATCGATATGACTTGGAGCCATTTAGTATGAGGAGGAAGGGTTTTTGGTTACTGTCCACTGTGTCAAAGCTTCTCAATAAATTCATCCCGCAACTCTCCCATCCGTCAGATGGTCTTGTGTTCCAGACGCATCGGATGCATCTTCCTATTCAGGGAAAATCATTGAATGCTACTGGGACCCCAAGGAGAATCATTGGGTCTGTATGCGGATAA 1509 0.4155 MNNEDTRRDLKRKFPHVDRLQEHGSYNKNLLPPGWLGCPAYGQEIGCIIPSKVPLGESFDDIITSQKYSPKQAILQQRHLGRQIGLVIDLTNTTRYYPISDWTRERIRHVKIRCKGRDSVPDDESVNRFCNEVLGFLSRRTNTNEYIFVHCTHGHNRTGYMIVHFLVRTESISVTEAMNKFSAARDPGIYKQDYIDALYMYYHERKPEEVVCPQTPEWKRLADPEFHRAVDKSVENIGGVPLHENITRNGVLTNDDVLGDPVHSNQLHSMRLECYQLLKLGTGGRGSLQFPGSHPVSLNRDNVQLLRQRYYYATWKADGTRFMMLITCDGCYLIDRKFHFRKVHMRFPCRYLNGGTPEKNHHYTLLDGEMIIDKDPHTQKQERRYLIYDLMAINRVSVTELPFYERWKLLEKEVIEPRNMEREALCKSINPYYRYDLEPFSMRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQTHRMHLPIQGKSLNATGTPRRIIGSVCG 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2298 502 CDD RNA_5'-triphosphatase 34 200 - -
Prci1g2298 502 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 196 IPR000387 GO:0016311|GO:0016791
Prci1g2298 502 FunFam mRNA capping enzyme family protein 27 237 - -
Prci1g2298 502 CDD Adenylation_mRNA_capping 265 474 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2298 502 SMART dsp_5 54 204 IPR020422 GO:0006470|GO:0008138
Prci1g2298 502 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Prci1g2298 502 FunFam mRNA capping enzyme, putative 253 480 - -
Prci1g2298 502 Gene3D Protein tyrosine phosphatase superfamily 6 224 IPR029021 -
Prci1g2298 502 PANTHER MRNA-CAPPING ENZYME 27 477 - -
Prci1g2298 502 Gene3D DNA ligase/mRNA capping enzyme 246 485 - -
Prci1g2298 502 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 259 475 - -
Prci1g2298 502 PIRSF mRNA_capping_HCE 18 483 IPR017074 GO:0004484|GO:0006370|GO:0140818
Prci1g2298 502 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 219 IPR029021 -
Prci1g2298 502 Pfam mRNA capping enzyme, catalytic domain 294 476 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2298 502 Pfam Dual specificity phosphatase, catalytic domain 80 202 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2298 Prci-Chr1 43492589 43499701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2298 25 474 Protein tyrosine phosphatase (PTP) family AT3G09100 58.297 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2298 - K13917 gmx:100778292 785.793