Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2296 ATGAATAATGAAGACACGCGCAGAGATTTAAAAAGAAAGTTCCCACATGTGGACCGGTTGCAGGAGCATGGATCTTATAACAAAAATTTGCTTCCTCCTGGTTGGTTGGGCTGCCCAGCGTATGGTCAAGAAATAGGATGCATTATCCCTTCGAAGGTTCCGCTTGGTGAATCCTTTGATGATATCATTACAAGTCAAAAATATTCTCCCAAGCAGGCAATTCTTCAACAAAGACATTTAGGTAGACAAATCGGTCTAGTGATTGATTTGACAAACACTACTCGTTACTACCCAATATCAGATTGGACCAGAGAAAGAATTCGTCATGTTAAGATAAGATGCAAAGGAAGGGATTCCGTGCCCGACGATGAATCTGTAAACAGATTTTGCAATGAGGTCCTGGGTTTTCTCTCCCGAAGAACAAACACAAATGAATATATATTCGTGCATTGCACCCATGGGCACAATCGCACTGGCTATATGATTGTTCATTTTCTTGTCCGCACAGAATCAATTTCAGTCACTGAGGCAATGAATAAATTTTCTGCAGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGATGCTTTGTACATGTATTATCATGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAGTGGAAGAGACTTGCTGATCCTGAGTTTCATCGCGCAGTTGACAAATCTGTAGAAAATATTGGTGGTGTTCCTTTGCATGAGAATATCACGCGGAATGGAGTATTGACAAACGATGATGTTTTAGGAGATCCTGTACATTCAAATCAACTGCATTCAATGCGACTAGAGTGTTACCAACTGCTTAAGTTGGGCACAGGGGGAAGGGGATCTTTGCAGTTTCCAGGATCACATCCTGTTTCCCTCAACAGGGACAATGTACAACTCTTAAGACAACGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTTTATGATGTTGATCACCTGTGATGGATGTTATTTGATTGACAGAAAGTTTCATTTTCGAAAGGTCCATATGCGGTTTCCTTGCAGATATTTGAATGGGGGCACACCTGAAAAGAATCACCACTATACATTACTTGATGGCGAGATGATAATTGACAAGGATCCACATACACAAAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCTATTAATCGAGTTTCTGTGACTGAGCTGCCTTTCTATGAACGTTGGAAACTGCTAGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGCTCTTTGCAAGAGTATAAATCCTTATTATCGATATGACTTGGAGCCATTTAGTATGAGGAGGAAGGGTTTTTGGTTACTGTCCACTGTGTCAAAGCTTCTCAATAAATTCATCCCGCAACTCTCCCATCCGTCAGATGGTCTTGTGTTCCAGGGCTGGGATGATCCTTATGTCCCCCGCACACATGAGGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGTTGGGAGCAGGTGGTCGTTACCTGCTCTTTCTTCATGAACGTGGAAGGAAGAAGTTGATGGAAGGGAATAGGGCTTTTTTAAAAGACGCATCGGATGCATCTTCCTATTCAGGGAAAATCATTGAATGCTACTGGGACCCCAAGGAGAATCATTGGGTCTGTATGCGGATAAGGACTGACAAATCAACTCCGAATGAGATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGAAGTTGTTTTGAACGAGATGAATGAGATCATACGCCTGCCCTTGTATGCGGACAGAATAGAAAGGGATATCAAGGCTCACCAACAAATGGTCTCTGCAAAGCGAAAGTGA 1872 0.4199 MNNEDTRRDLKRKFPHVDRLQEHGSYNKNLLPPGWLGCPAYGQEIGCIIPSKVPLGESFDDIITSQKYSPKQAILQQRHLGRQIGLVIDLTNTTRYYPISDWTRERIRHVKIRCKGRDSVPDDESVNRFCNEVLGFLSRRTNTNEYIFVHCTHGHNRTGYMIVHFLVRTESISVTEAMNKFSAARDPGIYKQDYIDALYMYYHERKPEEVVCPQTPEWKRLADPEFHRAVDKSVENIGGVPLHENITRNGVLTNDDVLGDPVHSNQLHSMRLECYQLLKLGTGGRGSLQFPGSHPVSLNRDNVQLLRQRYYYATWKADGTRFMMLITCDGCYLIDRKFHFRKVHMRFPCRYLNGGTPEKNHHYTLLDGEMIIDKDPHTQKQERRYLIYDLMAINRVSVTELPFYERWKLLEKEVIEPRNMEREALCKSINPYYRYDLEPFSMRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFELGAGGRYLLFLHERGRKKLMEGNRAFLKDASDASSYSGKIIECYWDPKENHWVCMRIRTDKSTPNEINTYRKVMRSIKDNITEEVVLNEMNEIIRLPLYADRIERDIKAHQQMVSAKRK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2296 623 FunFam mRNA capping enzyme family protein 491 600 - -
Prci1g2296 623 Pfam Dual specificity phosphatase, catalytic domain 81 202 IPR000340 GO:0008138|GO:0016311
Prci1g2296 623 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Prci1g2296 623 Pfam mRNA capping enzyme, C-terminal domain 497 590 IPR013846 -
Prci1g2296 623 Coils Coil 604 623 - -
Prci1g2296 623 PANTHER MRNA-CAPPING ENZYME 27 604 - -
Prci1g2296 623 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 219 IPR029021 -
Prci1g2296 623 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 259 493 - -
Prci1g2296 623 CDD RNA_5'-triphosphatase 34 200 - -
Prci1g2296 623 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 196 IPR000387 GO:0016311|GO:0016791
Prci1g2296 623 Gene3D - 524 600 IPR012340 -
Prci1g2296 623 SMART dsp_5 54 204 IPR020422 GO:0006470|GO:0008138
Prci1g2296 623 SUPERFAMILY Nucleic acid-binding proteins 495 608 IPR012340 -
Prci1g2296 623 Gene3D Protein tyrosine phosphatase superfamily 6 224 IPR029021 -
Prci1g2296 623 CDD Adenylation_mRNA_capping 265 493 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2296 623 FunFam mRNA capping enzyme, putative 253 490 - -
Prci1g2296 623 FunFam mRNA capping enzyme family protein 27 237 - -
Prci1g2296 623 PIRSF mRNA_capping_HCE 18 623 IPR017074 GO:0004484|GO:0006370|GO:0140818
Prci1g2296 623 Pfam mRNA capping enzyme, catalytic domain 294 492 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2296 623 Gene3D DNA ligase/mRNA capping enzyme 253 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2296 Prci-Chr1 43492150 43499675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2296 25 613 Protein tyrosine phosphatase (PTP) family AT3G09100 61.307 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2296 - K13917 gmx:100778292 1040.41