Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2294 ATGAATAATGAAGACACGCGCAGAGATTTAAAAAGAAAGTTCCCACATGTGGACCGGTTGCAGGAGCATGGATCTTATAACAAAAATTTGCTTCCTCCTGGTTGGTTGGGCTGCCCAGCGTATGGTCAAGAAATAGGATGCATTATCCCTTCGAAGGTTCCGCTTGGTGAATCCTTTGATGATATCATTACAAGTCAAAAATATTCTCCCAAGCAGGCAATTCTTCAACAAAGACATTTAGGTAGACAAATCGGTCTAGTGATTGATTTGACAAACACTACTCGTTACTACCCAATATCAGATTGGACCAGAGAAAGAATTCGTCATGTTAAGATAAGATGCAAAGGAAGGGATTCCGTGCCCGACGATGAATCTGTAAACAGATTTTGCAATGAGGTCCTGGGTTTTCTCTCCCGAAGAACAAACACAAATGAATATATATTCGTGCATTGCACCCATGGGCACAATCGCACTGGCTATATGATTGTTCATTTTCTTGTCCGCACAGAATCAATTTCAGTCACTGAGGCAATGAATAAATTTTCTGCAGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGATGCTTTGTACATGTATTATCATGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAGTGGAAGAGACTTGCTGATCCTGAGTTTCATCGCGCAGTTGACAAATCTGTAGAAAATATTGGTGGTGTTCCTTTGCATGAGAATATCACGCGGAATGGAGTATTGACAAACGATGATGTTTTAGGAGATCCTGTACATTCAAATCAACTGCATTCAATGCGACTAGAGTGTTACCAACTGCTTAAGTTGGGCACAGGGGGAAGGGGATCTTTGCAGTTTCCAGGATCACATCCTGTTTCCCTCAACAGGGACAATGTACAACTCTTAAGACAACGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTTTATGATGTTGATCACCTGTGATGGATGTTATTTGATTGACAGAAAGTTTCATTTTCGAAAGGTCCATATGCGGTTTCCTTGCAGATATTTGAATGGGGGCACACCTGAAAAGAATCACCACTATACATTACTTGATGGCGAGATGATAATTGACAAGGATCCACATACACAAAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCTATTAATCGAGTTTCTGTGACTGAGATGAGGAGGAAGGGTTTTTGGTTACTGTCCACTGTGTCAAAGCTTCTCAATAAATTCATCCCGCAACTCTCCCATCCGTCAGATGGTCTTGTGTTCCAGGGCTGGGATGATCCTTATGTCCCCCGCACACATGAGGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGTTGGGAGCAGGTGGTCGTTACCTGCTCTTTCTTCATGAACGTGGAAGGAAGAAGTTGATGGAAGGGAATAGGGCTTTTTTAAAAGACGCATCGGATGCATCTTCCTATTCAGGGAAAATCATTGAATGCTACTGGGACCCCAAGGAGAATCATTGGGTCTGTATGCGGATAAGGACTGACAAATCAACTCCGAATGAGATCAATACCTATAGAAAGGTTCTACATACCAATGTAATGCGAAGCATAAAGGATAACATCACAGAAGAAGTTGTTTTGAACGAGATGAATGAGATCATACGCCTGCCCTTGTATGCGGACAGAATAGAAAGGGATATCAAGGCTCACCAACAAATGGTCTCTGCAAAGCGAAAGTGA 1764 0.4212 MNNEDTRRDLKRKFPHVDRLQEHGSYNKNLLPPGWLGCPAYGQEIGCIIPSKVPLGESFDDIITSQKYSPKQAILQQRHLGRQIGLVIDLTNTTRYYPISDWTRERIRHVKIRCKGRDSVPDDESVNRFCNEVLGFLSRRTNTNEYIFVHCTHGHNRTGYMIVHFLVRTESISVTEAMNKFSAARDPGIYKQDYIDALYMYYHERKPEEVVCPQTPEWKRLADPEFHRAVDKSVENIGGVPLHENITRNGVLTNDDVLGDPVHSNQLHSMRLECYQLLKLGTGGRGSLQFPGSHPVSLNRDNVQLLRQRYYYATWKADGTRFMMLITCDGCYLIDRKFHFRKVHMRFPCRYLNGGTPEKNHHYTLLDGEMIIDKDPHTQKQERRYLIYDLMAINRVSVTEMRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFELGAGGRYLLFLHERGRKKLMEGNRAFLKDASDASSYSGKIIECYWDPKENHWVCMRIRTDKSTPNEINTYRKVLHTNVMRSIKDNITEEVVLNEMNEIIRLPLYADRIERDIKAHQQMVSAKRK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2294 587 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Prci1g2294 587 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 259 452 - -
Prci1g2294 587 Gene3D - 483 564 IPR012340 -
Prci1g2294 587 PANTHER MRNA-CAPPING ENZYME 27 401 - -
Prci1g2294 587 Pfam mRNA capping enzyme, C-terminal domain 456 554 IPR013846 -
Prci1g2294 587 PIRSF mRNA_capping_HCE 18 401 IPR017074 GO:0004484|GO:0006370|GO:0140818
Prci1g2294 587 PIRSF mRNA_capping_HCE 399 587 IPR017074 GO:0004484|GO:0006370|GO:0140818
Prci1g2294 587 FunFam mRNA capping enzyme family protein 27 237 - -
Prci1g2294 587 Gene3D DNA ligase/mRNA capping enzyme 246 400 - -
Prci1g2294 587 CDD RNA_5'-triphosphatase 34 200 - -
Prci1g2294 587 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 196 IPR000387 GO:0016311|GO:0016791
Prci1g2294 587 Pfam mRNA capping enzyme, catalytic domain 294 401 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2294 587 Pfam Dual specificity phosphatase, catalytic domain 81 202 IPR000340 GO:0008138|GO:0016311
Prci1g2294 587 SMART dsp_5 54 204 IPR020422 GO:0006470|GO:0008138
Prci1g2294 587 SUPERFAMILY Nucleic acid-binding proteins 454 572 IPR012340 -
Prci1g2294 587 Gene3D DNA ligase/mRNA capping enzyme 401 451 - -
Prci1g2294 587 Coils Coil 568 587 - -
Prci1g2294 587 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 219 IPR029021 -
Prci1g2294 587 CDD Adenylation_mRNA_capping 265 452 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2294 587 Gene3D Protein tyrosine phosphatase superfamily 6 224 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2294 Prci-Chr1 43492150 43499728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2294 25 577 Protein tyrosine phosphatase (PTP) family AT3G09100 56.951 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2294 K13917 - gmx:100778292 933.324