Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2288 ATGGAAGGACAAAGTGACCAAGAGAACCCTCCGAAGATGATGCCTTCCAACTCTAGAGGAAGTGGTGAGGATTCCGCCACAGCTGATGGAAAAATTGGGAATGGAAGCCAGGGGACCTGCCTCCCAGAACCATTTCATAACTATGTGGAGTATCTCACAGAAGCCTCACCATATCTGCCAAATACTACCGCCGAGTATGTACTTGGCAGCTGTTATCCTCCTGTTGGTAGCTTACACGATGTTAATGGGGTCAATGGAACAGACAGGAACTTCTTTTATAATGATCCAGGAAAAGCATGCTGTTTTAAAGCTCCTGATTCTTCTGCTGGCATAGACTTTAGGAAGGTGGGTTTTTGGAGACCAAATAGTGAAGGCCACCAATCGAAGAAATTCGCAACTAACCAACCCGACCATCATTCTGAGAGCCAAGCTCCGTGGAAAGCAGAATCAACTGGAGATAAGCATTCTGCTTCAAAACTTGATCGAAGGGTAACAGGAGGTGAACCTGGTTTCCTTCCCAAATCACGAAGTAGTTCATCAAAACAGAAAGCCATGGCAGCTGACCGTCAACGCAGGCAACGTATTGCTGATAACCTTAAAGCTTTGCACGACTTGCTACCGGCTCCAGCAGAGGGTTGCTCGACATATATACTGGATGACATCATTGACTATGTCAAATATTTGCAGCTTCAGATAAAGGTATTAAGTGGAAGTAGATTGCAAGGCGAATCACCTGCCATGCCACTCACATTCCGTGAGGGTTATGGCCACTATATTAGCCAGCAGATGCTGAATGAACCTCTTGAGGAGATGATGGGAAAACTGGTTGAGGAAAATCCAGCAGCAGCAGCTCAGCTGTTAGAGAGCAAGGGCCTTTATCTGTTGCCTTTGACCTTGGTTGAAGACTTACGCCAAGCTATGCAGATGTTTGGCGGGAATCCACGTGTCTAA 951 0.4637 MEGQSDQENPPKMMPSNSRGSGEDSATADGKIGNGSQGTCLPEPFHNYVEYLTEASPYLPNTTAEYVLGSCYPPVGSLHDVNGVNGTDRNFFYNDPGKACCFKAPDSSAGIDFRKVGFWRPNSEGHQSKKFATNQPDHHSESQAPWKAESTGDKHSASKLDRRVTGGEPGFLPKSRSSSSKQKAMAADRQRRQRIADNLKALHDLLPAPAEGCSTYILDDIIDYVKYLQLQIKVLSGSRLQGESPAMPLTFREGYGHYISQQMLNEPLEEMMGKLVEENPAAAAQLLESKGLYLLPLTLVEDLRQAMQMFGGNPRV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2288 316 MobiDBLite consensus disorder prediction 124 191 - -
Prci1g2288 316 CDD bHLH_AtbHLH_like 185 236 IPR045239 -
Prci1g2288 316 Gene3D - 173 241 IPR036638 GO:0046983
Prci1g2288 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 242 IPR036638 GO:0046983
Prci1g2288 316 MobiDBLite consensus disorder prediction 1 34 - -
Prci1g2288 316 MobiDBLite consensus disorder prediction 1 39 - -
Prci1g2288 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Prci1g2288 316 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2288 Prci-Chr1 43472499 43476207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2288 165 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 36.646 3.30e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g2288 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2288 - - gmx:100788949 327.405