Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2287 ATGACCATCACTATGGTAACGTGCAGACTAACACAACCACTAATAAATATTTCTTCTGTTAGCCCAAAAATAAACGTTACCTCTCTTCCACGGCAGAAGGAGAAGGTTTTGCTCGTGATGGGAACCACCGGCGCCGGCAAGTCCCGGCTCTCCATCGACCTCGCCACCCATTTTCCGGCGGAGATCATCAACTCCGATAAAATGCAAGTGTACGAAGGACTCGACATAGTGACAAACAAGATCGCCGAGGAAGAACAACGCGGTGTTCCTCACCATTTACTAGGAACAGAGAATCCCAACTCGGAATTCACGGCGAACAATTTCTGTGACATGGCCTCGCTCGCCATTGAGACAATCAGGGATCGTGGAAAGCTTCCGATCATCGTCGGAGGCTCAAATTCGTTCCTGGAGGCTTTAATCGACGACGACGACTATAAATTCCGATCAAGGTACGATTTCTGCTGCGTCTGGGTAGACGCGGGCTTACCAGATCTTTATTCGTACGTGGCACAACGGGTGGATCAGATGCTGGAGAAAGGAATGGTGAATGAATTGAGGCCGTTTTATAATCCAAAAGGGGACTATTCACGAGGGATCAGGAAGGCAATCGGAGTTCCAGAATTCGATAAATATTTTCGAAGGGAAGCAAGCGGGGACGAGGAGACGAGGCGGAGGCTGCTGGAAGAAGCGATGAGGGAAATGAAGAAGAACACGTGGAAATTGGCGAGAAAACAGCTGGGGAAGATCCAGAGGCTGTGGAGCGTGAAGAGATGGAAGATACATCGCGTAGATGCGACGTCGGTGTTCCGGAAGCGCGGGGAAGGAGAGGAGAATGACGAGTGGAGGAAGGTGGTGGCGGAGCCAAGTGCGAAGATCGTCGCCCAGTTTCTTCGCAACTCGACAATGACGAAGAGTGGGGTGGCTGGGGGGCTGAGGTTGGCGTCCTGGGAGAGCGCCATTGCTTCGTCGGCTCAACTTCAGTCTCTGGGTCGGTGCCCTGTCTGA 1005 0.5204 MTITMVTCRLTQPLINISSVSPKINVTSLPRQKEKVLLVMGTTGAGKSRLSIDLATHFPAEIINSDKMQVYEGLDIVTNKIAEEEQRGVPHHLLGTENPNSEFTANNFCDMASLAIETIRDRGKLPIIVGGSNSFLEALIDDDDYKFRSRYDFCCVWVDAGLPDLYSYVAQRVDQMLEKGMVNELRPFYNPKGDYSRGIRKAIGVPEFDKYFRREASGDEETRRRLLEEAMREMKKNTWKLARKQLGKIQRLWSVKRWKIHRVDATSVFRKRGEGEENDEWRKVVAEPSAKIVAQFLRNSTMTKSGVAGGLRLASWESAIASSAQLQSLGRCPV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2287 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 144 IPR027417 -
Prci1g2287 334 Pfam IPP transferase 69 142 - -
Prci1g2287 334 Pfam IPP transferase 147 246 - -
Prci1g2287 334 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 297 IPR039657 -
Prci1g2287 334 Gene3D - 33 297 IPR027417 -
Prci1g2287 334 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Prci1g2287 334 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2287 Prci-Chr1 43462169 43464740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2287 149 306 C2H2 Transcription Factor Family AT2G27760 32.432 5.59e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2287 K10760 - gmx:100803964 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2287 1 43462169 43464740 Prci3g3336 3 44119936 44121472 CCT
Prci1g2287 1 43462169 43464740 Prci1g2287 1 43462169 43464740 ECH