Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2230 ATGAGGCATCAGAGGAGGATGAACGGTGTAGCTTCTGCGAACAAAGGGTCTCCAGCCGATAACTCTCGAAAAAATGGTGACGGAGCTCCGACATTTAACTATGGCGGCTTCTTCCTTGAAGGTGAGAAAAATGTTTTGAATGATTCACTATGGCAAGCATGCGCCGGCGCTTCTGTCATTGTTCCATGCACGGGGGACTTGGTCTTCTACTTTCCTCAAGGCCACTTGGAACAGGTTGCTGACTTTACACGACAGGATGGTCACATGGAACTTCCTGCTTGTGATTTGCCTTCTAAAATCCTTTGCAGGGTGATGGGTGTTCAGCTAAAGGCGGAAGCCAACACAGACGAGGTTTTCGCTCAAATAACTCTAATTCCTGAGTCAAAGCTGGATGAAGTTAGTTCAGACGATAAAGAGTCTCGGCTAAAACACAGAAGTACTTCCAGGTGCTTTAGTAAGACTCTCACCCTGTCAGATACAGGTGCCCATGGTGGATTCTCCATTCCCAAGAAACTTGCCGAGGAATGCTTTCCACTGCTGGATATGTCTCAGCAACCACCAGGACAGGAGCTAGTTGCGAAGGACTTGCATGGTGTTATATGGAATTTTCGCCATACCTATCGTGGTCAGCCAAAACGACACCTGCTTACGGGTGGCTGGAGTTCATTCCTCCATTCAAAAAAGCTTGAACCCGGCGATACATGCATTTTTCTTTGCGGAGAAAAAGGAGAACTTGGTATTGGGATCCGCCGAGCACTTAAACAACACAACAAAACATCCTCATCCACATGCGTGATATCTGGCCATAGCATGCAACTCGGGATATTGGCCACTGCTTCTTATGCTGTTGCTACGGGATCCATGTTTACTGTCTACTACCGTCCCTGGACTTGTCCCTCTGAATTCATTGTTCCACTGGATCACTACATGAAGTCAGCTAAAATGAAATATTCATGTGGACTGAGGATACAAATGCAGTTTGAAGCCGAAGAATCTACAAGGAGATATGCAGGAACCATAATAGGTATTGACGATATCGATGGCAAGAAGTGGCCTGGTTCAGAATGGAGATGTCTCAAGGTGAAATGGGATGCCAAGCTTGATATAGATATGCGTCCTGAAAGGGTTTCTCCTTGGAACATTAAGCCCTTAGAATCTTCCGGGAAGAGCATTCCTAATCTACCCCCACCAAAGAGGCCACGTTTACTTGACCCATCAATGTCTGGATTATGTGATCTTACCAAGGATGACATCGATTTGAACTCAGCCAACTATGCATCTCACATATGTGAGAGGGACTTACAAGGTCAAGATTACAAAGATGCAGGCTTCCAACAATATGACTCACAGTTCAAGACGAAGAATCAACTGCACTTTGAACTGCAAATCCCTGTTTGCCATTGTTCAGCATCATTTCCGGATGATGACATTTCAACTTCAAGCCCCCCCAAACAGCCCCTAATCCCGACCACCAATGAAGAATGCAATAATATCTCTGTCACCAGGTACCTTTCACTCTCAAATGTGAATTCCAATGATTCTGAATCCCAGGGATGGCGGGCTTCTGAATCGAGGGATGATAATGATAATAAAACTGAATACAAGCTTTTCGGGATAAGCTTAAACCACTCGGAGCTCCCTTCACCACAAGTTGCTGCTTCTAGCAGTACTTCAACCCTTCATGTTCCTCCAATGTCTCAGTCAAGCGTTTCTGCGACTATCCCGGTTTCCAAACCATCAAACGCTATTTCAGGTGTTGCGTCGCAGAAAAAATGCAAGAAATGTTGCTCTGTTAATAGCCGGACTTGCACAAAGGTGCTTAAGCGTGGAAATGCACTAGGTAGATCAATTGACCTCTCGCGTATCACTGGATACGATGAACTCATTTCTGAACTGGACGTGATGTTTGATTTCCAAGGAAGCTTAATAAATGGAAGCAGCGGATGGCATGTTGTCCCCATGGATGATGACGGGGATATGATGCTGTTTGGAGATTTCCCGTGGCAGTTAAGTGTGAGATCACTAGTAGTATGA 2034 0.4543 MRHQRRMNGVASANKGSPADNSRKNGDGAPTFNYGGFFLEGEKNVLNDSLWQACAGASVIVPCTGDLVFYFPQGHLEQVADFTRQDGHMELPACDLPSKILCRVMGVQLKAEANTDEVFAQITLIPESKLDEVSSDDKESRLKHRSTSRCFSKTLTLSDTGAHGGFSIPKKLAEECFPLLDMSQQPPGQELVAKDLHGVIWNFRHTYRGQPKRHLLTGGWSSFLHSKKLEPGDTCIFLCGEKGELGIGIRRALKQHNKTSSSTCVISGHSMQLGILATASYAVATGSMFTVYYRPWTCPSEFIVPLDHYMKSAKMKYSCGLRIQMQFEAEESTRRYAGTIIGIDDIDGKKWPGSEWRCLKVKWDAKLDIDMRPERVSPWNIKPLESSGKSIPNLPPPKRPRLLDPSMSGLCDLTKDDIDLNSANYASHICERDLQGQDYKDAGFQQYDSQFKTKNQLHFELQIPVCHCSASFPDDDISTSSPPKQPLIPTTNEECNNISVTRYLSLSNVNSNDSESQGWRASESRDDNDNKTEYKLFGISLNHSELPSPQVAASSSTSTLHVPPMSQSSVSATIPVSKPSNAISGVASQKKCKKCCSVNSRTCTKVLKRGNALGRSIDLSRITGYDELISELDVMFDFQGSLINGSSGWHVVPMDDDGDMMLFGDFPWQLSVRSLVV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2230 677 MobiDBLite consensus disorder prediction 10 27 - -
Prci1g2230 677 FunFam Auxin response factor 149 253 - -
Prci1g2230 677 SUPERFAMILY CAD & PB1 domains 602 674 - -
Prci1g2230 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 43 672 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci1g2230 677 MobiDBLite consensus disorder prediction 1 27 - -
Prci1g2230 677 SMART B3_2 151 253 IPR003340 GO:0003677
Prci1g2230 677 Gene3D - 316 391 - -
Prci1g2230 677 Pfam B3 DNA binding domain 151 251 IPR003340 GO:0003677
Prci1g2230 677 FunFam Auxin response factor 316 388 - -
Prci1g2230 677 Gene3D - 596 677 - -
Prci1g2230 677 Pfam AUX/IAA family 589 674 IPR033389 -
Prci1g2230 677 Gene3D - 149 253 IPR015300 -
Prci1g2230 677 MobiDBLite consensus disorder prediction 548 573 - -
Prci1g2230 677 CDD B3_DNA 149 251 IPR003340 GO:0003677
Prci1g2230 677 ProSiteProfiles PB1 domain profile. 601 677 IPR000270 GO:0005515
Prci1g2230 677 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Prci1g2230 677 SUPERFAMILY DNA-binding pseudobarrel domain 144 279 IPR015300 -
Prci1g2230 677 Pfam Auxin response factor 279 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci1g2230 677 MobiDBLite consensus disorder prediction 509 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2230 Prci-Chr1 42952412 42959017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2230 599 669 B3 DNA Binding Superfamily AT5G62000 53.521 1.95e-18 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci1g2230 AUX_IAA 4.4e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2230 - - pcin:129286310 1353.96