Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2216 ATGAGTGATTCTCCGAAGCACCCGCATCCATCGGATAAAGATCAAGAGCCGAAAGCTCAACGGCTATGTGACTACTGTGGCGACTCCACTGGTTTGCTTTACTGCCGAGCTGATTCTGCGAAGCTCTGTTTCTCTTGTGATCGTGAAGTTCACTCTACCAACCAGCTCTTCTCGAAGCATACTCGAGCTCTGCTCTGCAATGCCTGCGACGGTTCGCCTGCCACAATACTCTGTTCTACCGAAAGCTGCGTTTTCTGCCAGAATTGTGATTGGGAACGCCACAACCTTTCGCTGTCTTTGGTGCACGATAGGAGGCCGCTCGAGGGCTTCACGGGGTGTCCTTCCGTGACTGAGTTGTTAACGATTCTGGGTTTTGAAGATTTGGGGAAGAAAACCCTGTTTTCGACTGAGGACTGCGGAGGATGTGGCGTCGGTGACGGTGATGGGTTAGTAGGATCTGAGCTTGAGGAGGGCCTTTCGGATTTGTTGGTATGGGATGCTCCTGCTGTTGTTAGTCTTGACGATTTGATAACTTCTACAGGCTCGTCTCACAATTATCAGGCCATGGAGGTTCCTCCTCTGCCTAAGAACCGGAAGGCTGCTTGTGGTCAACACAAGGAAGAAATCATTAGTCAACTTCGTGAGCTTGCAAAGTCGGAGCCCAGCTTGAATTTTGGAGATGTAGATACTGAACGACTGAGCACCAGGCACCCCACGGTCCCTGAACAGTATTTGCAGTTGGAAAGTTTTTCCACAGGCTTTGAACATGACTTCGAAGCTGATATTTTTGCTTCGTGCGAGACAAGTGTTTTTGAGGGGCCTAGAGATAGTGAGACTGCAAATCAAGTTGTTCGTCCTAATACGCCGTTGAGAACTTATAAAGAGGGAGTTCATGATTTACATTCAATTTCCAATGTCTGTGAGGGTCCTACCTATCTTAACAATGGTGGACAACTGCCAAACTCTTTTGACTCCGAAAACTTGTCCACCACGCCAAAAGTTGCTCCATATGAGCTGACAAGTCAAGAAAGAGACTCTGCGTTATTACGTTACAAGGAGAAGAAGAAAACAAGAAGATTCGACAAGCATATTAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGACAAGAATCAAGGGTCGTTTTGCCAAGATAGAAGAACACTGA 1170 0.4735 MSDSPKHPHPSDKDQEPKAQRLCDYCGDSTGLLYCRADSAKLCFSCDREVHSTNQLFSKHTRALLCNACDGSPATILCSTESCVFCQNCDWERHNLSLSLVHDRRPLEGFTGCPSVTELLTILGFEDLGKKTLFSTEDCGGCGVGDGDGLVGSELEEGLSDLLVWDAPAVVSLDDLITSTGSSHNYQAMEVPPLPKNRKAACGQHKEEIISQLRELAKSEPSLNFGDVDTERLSTRHPTVPEQYLQLESFSTGFEHDFEADIFASCETSVFEGPRDSETANQVVRPNTPLRTYKEGVHDLHSISNVCEGPTYLNNGGQLPNSFDSENLSTTPKVAPYELTSQERDSALLRYKEKKKTRRFDKHIRYESRKVRAESRTRIKGRFAKIEEH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2216 389 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Prci1g2216 389 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Prci1g2216 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 386 - -
Prci1g2216 389 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
Prci1g2216 389 CDD Bbox1_BBX-like 22 65 - -
Prci1g2216 389 SMART bboxneu5 18 65 IPR000315 GO:0008270
Prci1g2216 389 Pfam CCT motif 344 385 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2216 Prci-Chr1 42847061 42849759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2216 21 359 C2C2-CO-like Transcription Factor Family AT2G47890 42.274 1.68e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci1g2216 CCT 3.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2216 - - pcin:129296118 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2216 1 42847061 42849759 Prci1g2216 1 42847061 42849759 ECH