Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1g2215 | ATGGAAGACCCTTCAACGCAAGACAGAGAGCACTTTGGAATGTTGCAGCATGGATGCGAGCACTACAAGAGAAGGTGCAAAATTCGAGCTCCGTGCTGTGACCAGATCTTCCCATGTCGTCACTGCCACAACGAGGCCATGAGCTCTCTTGACAACCCCAAAGAGCGCCATGAACTGGTCAGACGTGATGTTAAGCAAGTTATATGTTCAGTCTGTGATGCTGAGCAGGAGGTTGCCAAAGTGTGTTCTAATTGTGGTGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGACGATGATACAGATAAAGGGCAATTCCATTGCGAGGAATGTGGTATTTGCAGGGTTGGTGGTCGTGATAACTACTTTCATTGTCAGAAATGTGGATCTTGCTATGCAGTGGGCCTGAAAAATAATCACTTATGTGTAGAGAACTCAATGAAAAGCCACTGCCCTGTCTGCTATGAGTATCTATTTGACTCAATTAAAGGCACCACAATTATGAGGTGTGGACATACGATGCATATGGAATGCTTTCAAGAGATGGAAGCCCAAAATCAGTACCGTTGTCCTGTCTGCTTGAAGTCGATATTCAATATGTCGCAGAATTGGAGAAATCTAGATCTTGAGATTGAAGCTGTTCCGATGCCTCAGGAGTATAAGATTGAGGTCTCGATTCTGTGCAATGATTGCAATACCCCCAGCGTTGTGTCCTTTCACATTTTAGGTCACAAGTGCGGGCAATGCGGTTCGTACAACACCCGTAGGATTTCAACTCCTGAACATCAATGA | 801 | 0.4444 | MEDPSTQDREHFGMLQHGCEHYKRRCKIRAPCCDQIFPCRHCHNEAMSSLDNPKERHELVRRDVKQVICSVCDAEQEVAKVCSNCGVNMGEYYCEICKFYDDDTDKGQFHCEECGICRVGGRDNYFHCQKCGSCYAVGLKNNHLCVENSMKSHCPVCYEYLFDSIKGTTIMRCGHTMHMECFQEMEAQNQYRCPVCLKSIFNMSQNWRNLDLEIEAVPMPQEYKIEVSILCNDCNTPSVVSFHILGHKCGQCGSYNTRRISTPEHQ | 266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1g2215 | 266 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 12 | 265 | - | - | |
| Prci1g2215 | 266 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 224 | IPR013083 | - | |
| Prci1g2215 | 266 | Pfam | Zinc-ribbon | 201 | 258 | IPR039512 | - | |
| Prci1g2215 | 266 | SUPERFAMILY | Zinc hairpin stack | 90 | 147 | IPR037275 | - | |
| Prci1g2215 | 266 | SUPERFAMILY | RING/U-box | 153 | 203 | - | - | |
| Prci1g2215 | 266 | SMART | ring_2 | 154 | 196 | IPR001841 | - | |
| Prci1g2215 | 266 | Pfam | Ring finger domain | 153 | 196 | IPR001841 | - | |
| Prci1g2215 | 266 | ProSiteProfiles | Zinc finger CHY-type profile. | 12 | 87 | IPR008913 | GO:0008270 | |
| Prci1g2215 | 266 | Gene3D | - | 225 | 265 | - | - | |
| Prci1g2215 | 266 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 89 | 153 | IPR017921 | - | |
| Prci1g2215 | 266 | Pfam | CHY zinc finger | 19 | 99 | IPR008913 | GO:0008270 | |
| Prci1g2215 | 266 | SUPERFAMILY | CHY zinc finger-like | 16 | 88 | IPR037274 | GO:0008270 | |
| Prci1g2215 | 266 | ProSiteProfiles | Zinc finger RING-type profile. | 154 | 196 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci1g2215 | Prci-Chr1 | 42837168 | 42840757 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1g2215 | 17 | 262 | C2H2 Transcription Factor Family | AT3G18290 | 42.292 | 8.71e-57 | 194 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci1g2215 | K10144 | - | qsa:O6P43_007118 | 494.197 |