Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2214 ATGGAAGACCCTTCAACGCAAGACAGAGAGCACTTTGGAATGTTGCAGCATGGATGCGAGCACTACAAGAGAAGGTGCAAAATTCGAGCTCCGTGCTGTGACCAGATCTTCCCATGTCGTCACTGCCACAACGAGGCCATGAGCTCTCTTGACAACCCCAAAGAGCGCCATGAACTGGTCAGACGTGATGTTAAGCAAGTTATATGTTCAGTCTGTGATGCTGAGCAGGAGGTTGCCAAAGTGTGTTCTAATTGTGGTGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGACGATGATACAGATAAAGGGCAATTCCATTGCGAGGAATGTGGTATTTGCAGGGTTGGTGGTCGTGATAACTACTTTCATTGTCAGAAATGTGGTGTGCCCCCTTACCAACATCATGCTAGCTTCTTGGTTTTTACGAGTATAATATTATTTCTTGTTTTGTTTTGTATGAGTACAGGATCTTGCTATGCAGTGGGCCTGAAAAATAATCACTTATGTGTAGAGAACTCAATGAAAAGCCACTGCCCTGTCTGCTATGAGTATCTATTTGACTCAATTAAAGGCACCACAATTATGAGGTGTGGACATACGATGCATATGGAATGCTTTCAAGAGATGGAAGCCCAAAATCAGTACCGTTGTCCTGTCTGCTTGAAGTCGATATTCAATATGTCGCAGAATTGGAGAAATCTAGATCTTGAGATTGAAGCTGTTCCGATGCCTCAGGAGTATAAGATTGAGGTCTCGATTCTGTGCAATGATTGCAATACCCCCAGCGTTGTGTCCTTTCACATTTTAGGTCACAAGTGCGGGCAATGCGGTTCGTACAACACCCGTAGGATTTCAACTCCTGAACATCAATGA 885 0.4362 MEDPSTQDREHFGMLQHGCEHYKRRCKIRAPCCDQIFPCRHCHNEAMSSLDNPKERHELVRRDVKQVICSVCDAEQEVAKVCSNCGVNMGEYYCEICKFYDDDTDKGQFHCEECGICRVGGRDNYFHCQKCGVPPYQHHASFLVFTSIILFLVLFCMSTGSCYAVGLKNNHLCVENSMKSHCPVCYEYLFDSIKGTTIMRCGHTMHMECFQEMEAQNQYRCPVCLKSIFNMSQNWRNLDLEIEAVPMPQEYKIEVSILCNDCNTPSVVSFHILGHKCGQCGSYNTRRISTPEHQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2214 294 SUPERFAMILY RING/U-box 181 231 - -
Prci1g2214 294 SUPERFAMILY Zinc hairpin stack 90 133 IPR037275 -
Prci1g2214 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 252 IPR013083 -
Prci1g2214 294 Pfam Zinc-ribbon 229 286 IPR039512 -
Prci1g2214 294 ProSiteProfiles Zinc finger CTCHY-type profile. 89 181 IPR017921 -
Prci1g2214 294 Pfam RING-type zinc-finger 182 222 IPR027370 -
Prci1g2214 294 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Prci1g2214 294 SMART ring_2 182 224 IPR001841 -
Prci1g2214 294 ProSiteProfiles Zinc finger RING-type profile. 182 224 IPR001841 -
Prci1g2214 294 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
Prci1g2214 294 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 12 133 - -
Prci1g2214 294 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Prci1g2214 294 Gene3D - 253 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2214 Prci-Chr1 42837168 42840764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2214 17 290 C2H2 Transcription Factor Family AT3G18290 38.078 2.59e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2214 K10144 - qsa:O6P43_007118 479.174