Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2199 ATGAATCTCAATGGAACCAAAACTACTCAGGTAGCAGCTGCTGTTAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTAAAAACGGGGACCTGCAAATTCGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAGTCAAGCTCCACTAAATATTCATGGATACCCGTTACGCCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGCATGACCTGTAAATTCCATCATCCTCATCCTGCTGGTGCATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTAGCTAGGCCTTCAATGTTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTCCTTCTTTCTCCAGGGGTTGTTCCCTTTGCAGGATGGAGTCATTATACGGCACCTTTGAGTCCTGTGTTATCTCCTGGTGCTCAATCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCAACAACATCAGCTTTTGCTAGACCGTATGCTCCTCTTCCATCTACTACTGGCCTTTCAGGTGGTAGCCTGAAGGAACAAATATTTCCTGAAAGGCCTGGTGAACCTGAATGCCAATACTATCTAAGAACAGGGGACTGCAAATATGGATTTGCATGTCGATATCATCATCCTAGGGACCGGACTGTGACTCGGCCACTTCTCAGTCCCATTGGCCTTCCTTTACGTCCGGGGGTGCAACCTTGTGGTTTTTACTTACAAAACGGGCATTGCAAGTTTGGCTCTACTTGCAAATTTGACCATCCTTTGGGGTCTCTGAGATACAGTCCGTCAGCATCCTCTCTCATTGATATGCCAGTAACTCCATACCCTGTTGGATCCTTGCTGTCTACCCTGGCTCCTTCAACAGCATCTTCAGAGCTGATGTCAGGCTCAAAAGTGGAATCTTTTTCTACTAGAATGCCATCCTCTGGAAATGGCTCAAGCAATTCTGTCAGTTTAATTTTATCACAAGGTGGAACCGTCTCTCTTTCTGATGTTCAACTCTCAAGTCAAAGTTCTACTCCTTTAAACAGTAGCAGAAGCACTAGACAATGTGGTGACATACGATGA 1197 0.4645 MNLNGTKTTQVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIHGYPLRPGEKECSYYLKTGQCKFGMTCKFHHPHPAGASMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSMLPGSYVQGAYGPVLLSPGVVPFAGWSHYTAPLSPVLSPGAQSAVGATSLYGVTQLSSTTSAFARPYAPLPSTTGLSGGSLKEQIFPERPGEPECQYYLRTGDCKYGFACRYHHPRDRTVTRPLLSPIGLPLRPGVQPCGFYLQNGHCKFGSTCKFDHPLGSLRYSPSASSLIDMPVTPYPVGSLLSTLAPSTASSELMSGSKVESFSTRMPSSGNGSSNSVSLILSQGGTVSLSDVQLSSQSSTPLNSSRSTRQCGDIR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2199 398 ProSiteProfiles Zinc finger C3H1-type profile. 70 98 IPR000571 GO:0046872
Prci1g2199 398 MobiDBLite consensus disorder prediction 339 360 - -
Prci1g2199 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 254 IPR000571 GO:0046872
Prci1g2199 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 96 IPR000571 GO:0046872
Prci1g2199 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 51 IPR000571 GO:0046872
Prci1g2199 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 297 IPR000571 GO:0046872
Prci1g2199 398 PANTHER PROTEIN PHOSPHATASE RELATED 14 319 - -
Prci1g2199 398 SUPERFAMILY CCCH zinc finger 28 51 IPR036855 GO:0046872
Prci1g2199 398 MobiDBLite consensus disorder prediction 375 398 - -
Prci1g2199 398 SUPERFAMILY CCCH zinc finger 273 302 IPR036855 GO:0046872
Prci1g2199 398 SMART c3hfinal6 24 51 IPR000571 GO:0046872
Prci1g2199 398 SMART c3hfinal6 70 97 IPR000571 GO:0046872
Prci1g2199 398 SMART c3hfinal6 271 298 IPR000571 GO:0046872
Prci1g2199 398 SMART c3hfinal6 227 254 IPR000571 GO:0046872
Prci1g2199 398 Gene3D - 226 308 - -
Prci1g2199 398 Gene3D - 23 107 - -
Prci1g2199 398 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Prci1g2199 398 ProSiteProfiles Zinc finger C3H1-type profile. 227 255 IPR000571 GO:0046872
Prci1g2199 398 SUPERFAMILY CCCH zinc finger 231 256 IPR036855 GO:0046872
Prci1g2199 398 ProSiteProfiles Zinc finger C3H1-type profile. 24 52 IPR000571 GO:0046872
Prci1g2199 398 SUPERFAMILY CCCH zinc finger 72 98 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2199 Prci-Chr1 42716564 42723197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2199 19 347 C2H2 Transcription Factor Family AT5G18550 53.026 1.68e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci1g2199 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2199 - - lja:Lj5g3v1665190.1 660.603