Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2198 ATGGAGTTGTACGGTCGGAACCCGGGCAGGAATGGGTCGCAACCGGGTAATCCATCTGAATGGCACCCATCAGGCGGCGAAACTGGGCTTGAAGAATCCATGTGGCACTTAACCATGAGGGGCAGCGAATCTTACCCGGAGCGACCCGGTGCACCCAATTGTGTGTATTACATGCGAACTGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCCCGTGATCGTGCCGCGGTAGCAGCTGCTGTTAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTAAAAACGGGGACCTGCAAATTCGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAGTCAAGCTCCACTAAATATTCATGGATACCCGTTACGCCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGCATGACCTGTAAATTCCATCATCCTCATCCTGCTGGTGCATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTAGCTAGGCCTTCAATGTTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTCCTTCTTTCTCCAGGGGTTGTTCCCTTTGCAGGATGGAGTCATTATACGGCACCTTTGAGTCCTGTGTTATCTCCTGGTGCTCAATCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCAACAACATCAGCTTTTGCTAGACCGTATGCTCCTCTTCCATCTACTACTGGCCTTTCAGGTGGTAGCCTGAAGGAACAAATATTTCCTGAAAGGCCTGGTGAACCTGAATGCCAATACTATCTAAGAACAGGGGACTGCAAATATGGATTTGCATGTCGATATCATCATCCTAGGGACCGGACTGTGACTCGGCCACTTCTCAGTCCCATTGGCCTTCCTTTACGTCCGCAATACAATTAA 1035 0.4966 MELYGRNPGRNGSQPGNPSEWHPSGGETGLEESMWHLTMRGSESYPERPGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIHGYPLRPGEKECSYYLKTGQCKFGMTCKFHHPHPAGASMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSMLPGSYVQGAYGPVLLSPGVVPFAGWSHYTAPLSPVLSPGAQSAVGATSLYGVTQLSSTTSAFARPYAPLPSTTGLSGGSLKEQIFPERPGEPECQYYLRTGDCKYGFACRYHHPRDRTVTRPLLSPIGLPLRPQYN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2198 344 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Prci1g2198 344 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Prci1g2198 344 SUPERFAMILY CCCH zinc finger 53 77 IPR036855 GO:0046872
Prci1g2198 344 PANTHER PROTEIN PHOSPHATASE RELATED 36 342 - -
Prci1g2198 344 MobiDBLite consensus disorder prediction 1 29 - -
Prci1g2198 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Prci1g2198 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Prci1g2198 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Prci1g2198 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Prci1g2198 344 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Prci1g2198 344 Gene3D - 127 174 - -
Prci1g2198 344 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Prci1g2198 344 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Prci1g2198 344 Gene3D - 47 126 - -
Prci1g2198 344 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Prci1g2198 344 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Prci1g2198 344 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Prci1g2198 344 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Prci1g2198 344 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Prci1g2198 344 FunFam Zinc finger nuclease 2 47 124 - -
Prci1g2198 344 Gene3D - 289 334 - -
Prci1g2198 344 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2198 Prci-Chr1 42715971 42722588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2198 1 341 C2H2 Transcription Factor Family AT5G18550 52.089 2.84e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci1g2198 zf-CCCH 3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2198 - - gmx:100805017 613.994