Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2197 ATGGAGTTGTACGGTCGGAACCCGGGCAGGAATGGGTCGCAACCGGGTAATCCATCTGAATGGCACCCATCAGGCGGCGAAACTGGGCTTGAAGAATCCATGTGGCACTTAACCATGAGGGGCAGCGAATCTTACCCGGAGCGACCCGGTGCACCCAATTGTGTGTATTACATGCGAACTGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCCCGTGATCGTGCCGCGGTAGCAGCTGCTGTTAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTAAAAACGGGGACCTGCAAATTCGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAGTCAAGCTCCACTAAATATTCATGGATACCCGTTACGCCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGCATGACCTGTAAATTCCATCATCCTCATCCTGCTGGTGCATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTAGCTAGGCCTTCAATGTTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTCCTTCTTTCTCCAGGGGTTGTTCCCTTTGCAGGATGGAGTCATTATACGGCACCTTTGAGTCCTGTGTTATCTCCTGGTGCTCAATCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCAACAACATCAGCTTTTGCTAGACCGTATGCTCCTCTTCCATCTACTACTGGCCTTTCAGGTGGTAGCCTGAAGGAACAAATATTTCCTGAAAGGCCTGGTGAACCTGAATGCCAATACTATCTAAGAACAGGGGACTGCAAATATGGATTTGCATGTCGATATCATCATCCTAGGGACCGGACTGTGACTCGGCCACTTCTCAGTCCCATTGGCCTTCCTTTACGTCCGGGGGTGCAACCTTGTGGTTTTTACTTACAAAACGGGCATTGCAAGTTTGGCTCTACTTGCAAATTTGACCATCCTTTGGGGTCTCTGAGATACAGTCCGTCAGCATCCTCTCTCATTGATATGCCAGTAACTCCATACCCTGTTGGATCCTTGCTGTCTACCCTGGCTCCTTCAACAGCATCTTCAGAGCTGATGTCAGGCTCAAAAGTGGAATCTTTTTCTACTAGAATGCCATCCTCTGGAAATGGCTCAAGCAATTCTGTCAGTTTAATTTTATCACAAGGTGGAACCGTCTCTCTTTCTGATGTTCAACTCTCAAGTCAAAGTTCTACTCCTTTAAACAGTAGCAGAAGCACTAGACAATGTGGTGACATACGATGA 1404 0.4836 MELYGRNPGRNGSQPGNPSEWHPSGGETGLEESMWHLTMRGSESYPERPGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIHGYPLRPGEKECSYYLKTGQCKFGMTCKFHHPHPAGASMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSMLPGSYVQGAYGPVLLSPGVVPFAGWSHYTAPLSPVLSPGAQSAVGATSLYGVTQLSSTTSAFARPYAPLPSTTGLSGGSLKEQIFPERPGEPECQYYLRTGDCKYGFACRYHHPRDRTVTRPLLSPIGLPLRPGVQPCGFYLQNGHCKFGSTCKFDHPLGSLRYSPSASSLIDMPVTPYPVGSLLSTLAPSTASSELMSGSKVESFSTRMPSSGNGSSNSVSLILSQGGTVSLSDVQLSSQSSTPLNSSRSTRQCGDIR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2197 467 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Prci1g2197 467 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Prci1g2197 467 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Prci1g2197 467 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Prci1g2197 467 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Prci1g2197 467 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Prci1g2197 467 SUPERFAMILY CCCH zinc finger 53 77 IPR036855 GO:0046872
Prci1g2197 467 Gene3D - 126 174 - -
Prci1g2197 467 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Prci1g2197 467 FunFam Zinc finger nuclease 2 47 124 - -
Prci1g2197 467 MobiDBLite consensus disorder prediction 1 29 - -
Prci1g2197 467 MobiDBLite consensus disorder prediction 408 429 - -
Prci1g2197 467 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Prci1g2197 467 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Prci1g2197 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Prci1g2197 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Prci1g2197 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Prci1g2197 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Prci1g2197 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Prci1g2197 467 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Prci1g2197 467 PANTHER PROTEIN PHOSPHATASE RELATED 36 388 - -
Prci1g2197 467 MobiDBLite consensus disorder prediction 444 467 - -
Prci1g2197 467 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Prci1g2197 467 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Prci1g2197 467 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Prci1g2197 467 Gene3D - 295 377 - -
Prci1g2197 467 Gene3D - 47 125 - -
Prci1g2197 467 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2197 Prci-Chr1 42715970 42723197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2197 1 416 C2H2 Transcription Factor Family AT5G18550 52.620 6.74e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci1g2197 zf-CCCH 6.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2197 - - gmx:100812475 778.089