LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g2191	ATGGCGGGAAGGAGGAAACCTCTGGTACTCGCTTCCACCAAGTTGCTAATTAATTCTGTGCTCAGCTCATCACAAGGCGCGGAAGCAAGCCCTGGAGCCGGAGACAAGCTCTTCGATGACGACTCTCTCAGGAATTTGCAGTTACCCGTGGGCATTCTCCGACTCTCGGAGGATGGAAACGAGAGAACAGAACCTCAATCGGCTGCTCTTGACGATTCTGCGTTGGTCGGCCTATCAACTTCGCTTTTGAGAAGGCTTACTATTACTGCGGGTTCACTGGTGCTTGTCAAGAATGTTGAGATGAACATCCAGAGAATTGCTCAGGCAGTTGCCTTAGATCCTCCTGGCAGCAATGACTGCACATCTGGTGTTAAATTGCCCTCTCCCCCTATAATGCTTGCATTTCCTTCTTGTGCTTTCCCTCATGGTGACACGTTAGATCATGAAGCTGCTTATATATCTCCTCTCTTAGCTTTTAACCTCGATTTGCACATAACATGCTTAGAATCCATTCTATGCCAAGGGGAAGAGGCATTAGCATCCTATTTCAACCTGAAAGTGGATGGTGAGGCTACTGCAAAAAGCACGGAGACTTCTGTCATCAACATAGAATTGGTACCTTTGGTTCAAGCTCCTAGGTATGCATCACATTTAAGGGTTTCTTTTGTGAAGATACCACAATGTGGTACCCTTGAAACAATAAGGGGAAGTTCACCTATTGAATCAGAAGACCGCCAGAATATGATTGATTTGGCATTGCAAAACTATTTTCAAGTGGATAGATATTTGACAAAAGGAGATATTTTTAGCATCAGCATAAATTGGAACTGCAATTCCGTAGCATGTATTCCATGCAACCGAGAATCACAAAAGAAAAATGGAAATCTCATCTTTTTCAAGGTCATTGCTATGGAACCATCAGATGAACCAATTCTTCGTGTCAATCGATCGTCAACAGCTTTGGTGCTTGGAGGGAGCTTCTCTTCTGCTCTTCCACCAGATTTGTTAATTGCTGGACCAGAAGAGCCTGTGCCTTTACAACAGGACGCAGTAAAAATTTTGGCTTCAGTGCTTACACCAGCTTGCTGTCCATCAGCACTTTCTTTAAAATTCAGAGTTTCAGTTCTATTGTATGGATTGGAAGGTTGTGGGAAGCGGACTGTTGTTAGATATGTTGCTCATCGATTGGGCCTGCATGTGGTGGAATATAACTGTCATGATTTAACATTGTCAGAGAGGAACACATCTGCTGCGCTAGTTCAAGCTTTCAAGACAGCTCGAAGATACTCACCAACTATACTTCTTCTGCGTCATTTTGAAGTTTTTCGAGACATGCAAGCTAATGAGGGTCCAGTAAATGATCAAAGAGGAAATACATTTGAAATTGCATCAATTATTAGGAAATTCACTGAGCCAACTCCTAAAGATGGTGGCATATACTCCCATGAGAAACCAAATGGTGAATTTGTTGAGAAGAGTGCTGAAAAGACAAGTGGGCATCAGATCCTGTTGATTGCAGCTGCTGTTAGTTCAGAAGGTCTGCCTTCAACTATCAGACGCTGCTTCAGCCATGAAATAAAAATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATCCCAGTCACTGCAAAGTGTCTCTGAATTCCTCTCTAATACTGATGCTGACAGTTTTGTAAAAGAAATAGTTGGGCAGACATCTGGTTTTATGCCCCGGGACATGTGTGCTTTGATTGCTGATGTTGGTGCCAACCTATTTCCCAGGAGTTCCGAAGCTGTAGACAAAGCCAGGCCTAAGGATATTGATGGTTCTTTTAGTTCTGAAGTGATGCCGGAGAGCAACCACCGGAAAGTTGCGCCAGAGGTTCATGGCAAAGAACACTTGGCAAAAGCTTTGGATCGATCAAAGAAAAGAAATGCAGTTGCATTGGGTGCTCCAAAGGTTCCTGATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTAAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCCTGCATAAGGATCTGTTTTCATCTGGATTACGTAAGCGGTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACTGGCAAAACATTATTAGCCAAAGCTGTTGCTACCGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGGCCTGAACTGATTAACATGTACATTGGAGAGTCTGAGAAGAATGTGCGAGACATTTTCCAGAAGGCCAGATCATCACGACCATGTGTTATCTTCTTTGATGAGCTTGATTCTCTTGCTCCTGCTCGAGGTGCTTCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTGGCAGAGATTGATGGCCTGAATGATTCTGCACAGGATCTCTTTATTATAGGTGCAAGTAACAGGCCAGACTTGATAGACCCTGCACTTTTACGCCCTGGCAGATTTGATAAACTGCTGTATGTTGGAGTTAATTCTGATGCATCTTATAGAGAGCGGGTTCTTAAAGCACTTACCCGAAAGTTTAAATTGTCAGAAGATGTGTCACTTTACTCAATAGCTAAAAAGTGTCCGCCAAACTTTACTGGTGCAGACATGTACGCCTTGTGTGCAGATGCATGGTTTCAGGCTGCAAAACGCAAGGTTTTAAGTGCAGATCCAGAATCTTCCTGTAAGGATGACGAAGCAGATTCTGTTGTTGTTGAATACGATGATTTTGTCCAGGTCTTGGTGGAGCTGACTCCTTCTCTGTCTATGGCTGAGCTTAAAAAGTACGAGCAACTGAGAGATCAGTTTGAAGGGACGTCAAAATAA	2814	0.4364	MAGRRKPLVLASTKLLINSVLSSSQGAEASPGAGDKLFDDDSLRNLQLPVGILRLSEDGNERTEPQSAALDDSALVGLSTSLLRRLTITAGSLVLVKNVEMNIQRIAQAVALDPPGSNDCTSGVKLPSPPIMLAFPSCAFPHGDTLDHEAAYISPLLAFNLDLHITCLESILCQGEEALASYFNLKVDGEATAKSTETSVINIELVPLVQAPRYASHLRVSFVKIPQCGTLETIRGSSPIESEDRQNMIDLALQNYFQVDRYLTKGDIFSISINWNCNSVACIPCNRESQKKNGNLIFFKVIAMEPSDEPILRVNRSSTALVLGGSFSSALPPDLLIAGPEEPVPLQQDAVKILASVLTPACCPSALSLKFRVSVLLYGLEGCGKRTVVRYVAHRLGLHVVEYNCHDLTLSERNTSAALVQAFKTARRYSPTILLLRHFEVFRDMQANEGPVNDQRGNTFEIASIIRKFTEPTPKDGGIYSHEKPNGEFVEKSAEKTSGHQILLIAAAVSSEGLPSTIRRCFSHEIKMGPLTEEQRAEMLSQSLQSVSEFLSNTDADSFVKEIVGQTSGFMPRDMCALIADVGANLFPRSSEAVDKARPKDIDGSFSSEVMPESNHRKVAPEVHGKEHLAKALDRSKKRNAVALGAPKVPDVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSSRPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSAQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLSEDVSLYSIAKKCPPNFTGADMYALCADAWFQAAKRKVLSADPESSCKDDEADSVVVEYDDFVQVLVELTPSLSMAELKKYEQLRDQFEGTSK	937

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g2191	937	SMART	AAA_5	687	827	IPR003593	GO:0016887
	Prci1g2191	937	SMART	AAA_5	371	532	IPR003593	GO:0016887
	Prci1g2191	937	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	340	595	IPR027417	-
	Prci1g2191	937	FunFam	Peroxisome biogenesis protein 6	344	529	-	-
	Prci1g2191	937	Pfam	ATPase family associated with various cellular activities (AAA)	375	528	IPR003959	GO:0005524\|GO:0016887
	Prci1g2191	937	Pfam	ATPase family associated with various cellular activities (AAA)	691	823	IPR003959	GO:0005524\|GO:0016887
	Prci1g2191	937	PANTHER	AAA-FAMILY ATPASE	68	934	-	-
	Prci1g2191	937	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	650	931	IPR027417	-
	Prci1g2191	937	CDD	RecA-like_PEX6_r2	663	822	IPR047533	-
	Prci1g2191	937	Gene3D	-	343	549	IPR027417	-
	Prci1g2191	937	FunFam	Peroxisomal biogenesis factor 6	649	838	-	-
	Prci1g2191	937	Gene3D	-	825	911	-	-
	Prci1g2191	937	MobiDBLite	consensus disorder prediction	605	626	-	-
	Prci1g2191	937	FunFam	Peroxisome biogenesis protein 6	825	911	-	-
	Prci1g2191	937	ProSitePatterns	AAA-protein family signature.	794	812	IPR003960	GO:0005524\|GO:0016887
	Prci1g2191	937	Gene3D	-	649	926	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g2191	Prci-Chr1	42686795	42693749	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g2191	657	896	Calmodulin-binding Proteins	AT3G56690	37.759	2.12e-39	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g2191	K13339		-	qsa:O6P43_010733	1318.14