Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2188 ATGGCGGGAAGGAGGAAACCTCTGGTACTCGCTTCCACCAAGTTGCTAATTAATTCTGTGCTCAGCTCATCACAAGGCGCGGAAGCAAGCCCTGGAGCCGGAGACAAGCTCTTCGATGACGACTCTCTCAGGAATTTGCAGTTACCCGTGGGCATTCTCCGACTCTCGGAGGATGGAAACGAGAGAACAGAACCTCAATCGGCTGCTCTTGACGATTCTGCGTTGGTCGGCCTATCAACTTCGCTTTTGAGAAGGCTTACTATTACTGCGGGTTCACTGGTGCTTGTCAAGAATGTTGAGATGAACATCCAGAGAATTGCTCAGGCAGTTGCCTTAGATCCTCCTGGCAGCAATGACTGCACATCTGGTGTTAAATTGCCCTCTCCCCCTATAATGCTTGCATTTCCTTCTTGTGCTTTCCCTCATGGTGACACGTTAGATCATGAAGCTGCTTATATATCTCCTCTCTTAGCTTTTAACCTCGATTTGCACATAACATGCTTAGAATCCATTCTATGCCAAGGGGAAGAGGCATTAGCATCCTATTTCAACCTGAAAGTGGATGGTGAGGCTACTGCAAAAAGCACGGAGACTTCTGTCATCAACATAGAATTGGTACCTTTGGTTCAAGCTCCTAGGTATGCATCACATTTAAGGGTTTCTTTTGTGAAGATACCACAATGTGGTACCCTTGAAACAATAAGGGGAAGTTCACCTATTGAATCAGAAGACCGCCAGAATATGATTGATTTGGCATTGCAAAACTATTTTCAAGTGGATAGATATTTGACAAAAGGAGATATTTTTAGCATCAGCATAAATTGGAACTGCAATTCCGTAGCATGTATTCCATGCAACCGAGAATCACAAAAGAAAAATGGAAATCTCATCTTTTTCAAGGTCATTGCTATGGAACCATCAGATGAACCAATTCTTCGTGTCAATCGATCGTCAACAGCTTTGGTGCTTGGAGGGAGCTTCTCTTCTGCTCTTCCACCAGATTTGTTAATTGCTGGACCAGAAGAGCCTGTGCCTTTACAACAGGACGCAGTAAAAATTTTGGCTTCAGTGCTTACACCAGCTTGCTGTCCATCAGCACTTTCTTTAAAATTCAGAGTTTCAGTTCTATTGTATGGATTGGAAGGTTGTGGGAAGCGGACTGTTGTTAGATATGTTGCTCATCGATTGGGCCTGCATGTGGTGGAATATAACTGTCATGATTTAACATTGTCAGAGAGGAACACATCTGCTGCGCTAGTTCAAGCTTTCAAGACAGCTCGAAGATACTCACCAACTATACTTCTTCTGCGTCATTTTGAAGTTTTTCGAGACATGCAAGCTAATGAGGGTCCAGTAAATGATCAAAGAGGAAATACATTTGAAATTGCATCAATTATTAGGAAATTCACTGAGCCAACTCCTAAAGATGGTGGCATATACTCCCATGAGAAACCAAATGGTGAATTTGTTGAGAAGAGTGCTGAAAAGACAAGTGGGCATCAGATCCTGTTGATTGCAGCTGCTGTTAGTTCAGAAGGTCTGCCTTCAACTATCAGACGCTGCTTCAGCCATGAAATAAAAATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATCCCAGTCACTGCAAAGTGTCTCTGAATTCCTCTCTAATACTGATGCTGACAGTTTTGTAAAAGAAATAGTTGGGCAGACATCTGGTTTTATGCCCCGGGACATGTGTGCTTTGATTGCTGATGTTGGTGCCAACCTATTTCCCAGGAGTTCCGAAGCTGTAGACAAAGCCAGGCCTAAGGATATTGATGGTTCTTTTAGTTCTGAAGTGATGCCGGAGAGCAACCACCGGAAAGTTGCGCCAGAGGTTCATGGCAAAGAACACTTGGCAAAAGCTTTGGATCGATCAAAGAAAAGAAATGCAGTTGCATTGGGTGCTCCAAAGGTTCCTGATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTAAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCCTGCATAAGGATCTGTTTTCATCTGGATTACGTAAGCGGTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACTGGCAAAACATTATTAGCCAAAGCTGTTGCTACCGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGGCCTGAACTGATTAACATGTACATTGGAGAGTCTGAGAAGAATGTGCGAGACATTTTCCAGAAGGCCAGATCATCACGACCATGTGTTATCTTCTTTGATGAGCTTGATTCTCTTGCTCCTGCTCGAGGTGCTTCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTGGCAGAGATTGATGGCCTGAATGATTCTGCACAGGATCTCTTTATTATAGGTGCAAGTAACAGGCCAGACTTGATAGACCCTGCACTTTTACGCCCTGGCAGATTTGATAAACTGCTGTATGTTGGAGTTAATTCTGATGCATCTTATAGAGAGCGACATGTACGCCTTGTGTGCAGATGCATGGTTTCAGGCTGCAAAACGCAAGATCCAGAATCTTCCTGTAAGGATGACGAAGCAGATTCTGTTGTTGTTGAATACGATGATTTTGTCCAGGTCTTGGTGGAGCTGACTCCTTCTCTGTCTATGGCTGAGCTTAAAAAGTACGAGCAACTGAGAGATCAGTTTGAAGGGACGTCAAAATAA 2706 0.4383 MAGRRKPLVLASTKLLINSVLSSSQGAEASPGAGDKLFDDDSLRNLQLPVGILRLSEDGNERTEPQSAALDDSALVGLSTSLLRRLTITAGSLVLVKNVEMNIQRIAQAVALDPPGSNDCTSGVKLPSPPIMLAFPSCAFPHGDTLDHEAAYISPLLAFNLDLHITCLESILCQGEEALASYFNLKVDGEATAKSTETSVINIELVPLVQAPRYASHLRVSFVKIPQCGTLETIRGSSPIESEDRQNMIDLALQNYFQVDRYLTKGDIFSISINWNCNSVACIPCNRESQKKNGNLIFFKVIAMEPSDEPILRVNRSSTALVLGGSFSSALPPDLLIAGPEEPVPLQQDAVKILASVLTPACCPSALSLKFRVSVLLYGLEGCGKRTVVRYVAHRLGLHVVEYNCHDLTLSERNTSAALVQAFKTARRYSPTILLLRHFEVFRDMQANEGPVNDQRGNTFEIASIIRKFTEPTPKDGGIYSHEKPNGEFVEKSAEKTSGHQILLIAAAVSSEGLPSTIRRCFSHEIKMGPLTEEQRAEMLSQSLQSVSEFLSNTDADSFVKEIVGQTSGFMPRDMCALIADVGANLFPRSSEAVDKARPKDIDGSFSSEVMPESNHRKVAPEVHGKEHLAKALDRSKKRNAVALGAPKVPDVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSSRPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSAQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERHVRLVCRCMVSGCKTQDPESSCKDDEADSVVVEYDDFVQVLVELTPSLSMAELKKYEQLRDQFEGTSK 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2188 901 SMART AAA_5 687 827 IPR003593 GO:0016887
Prci1g2188 901 SMART AAA_5 371 532 IPR003593 GO:0016887
Prci1g2188 901 Gene3D - 343 549 IPR027417 -
Prci1g2188 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 595 IPR027417 -
Prci1g2188 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 892 IPR027417 -
Prci1g2188 901 PANTHER AAA-FAMILY ATPASE 71 898 - -
Prci1g2188 901 Gene3D - 649 824 IPR027417 -
Prci1g2188 901 CDD RecA-like_PEX6_r2 663 822 IPR047533 -
Prci1g2188 901 FunFam Peroxisome biogenesis protein 6 344 529 - -
Prci1g2188 901 FunFam Peroxisomal biogenesis factor 6 649 837 - -
Prci1g2188 901 MobiDBLite consensus disorder prediction 605 626 - -
Prci1g2188 901 Pfam ATPase family associated with various cellular activities (AAA) 691 823 IPR003959 GO:0005524|GO:0016887
Prci1g2188 901 Pfam ATPase family associated with various cellular activities (AAA) 375 528 IPR003959 GO:0005524|GO:0016887
Prci1g2188 901 ProSitePatterns AAA-protein family signature. 794 812 IPR003960 GO:0005524|GO:0016887
Prci1g2188 901 Gene3D - 825 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2188 Prci-Chr1 42686795 42693752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2188 657 842 Calmodulin-binding Proteins AT3G56690 40.860 1.18e-34 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2188 K13339 - qsa:O6P43_010733 1207.59